Filter
Article

Search results

  • 2024

    Shared chromosomal segments connect ancient human societies

    Bergström, A., 1 Jan 2024, In: Nature Genetics. 56, 1, p. 10-11 2 p.

    Research output: Contribution to journalArticle

  • 2023

    The history of Coast Salish “woolly dogs” revealed by ancient genomics and Indigenous Knowledge

    Lin, A. T., Hammond-Kaarremaa, L., Liu, H-L., Stantis, C., McKechnie, I., Pavel, M., Pavel, S. S. M., Wyss, S. S., Sparrow, D. Q., Carr, K., Aninta, S. G., Perri, A., Hartt, J., Bergström, A., Carmagnini, A., Charlton, S., Dalén, L., Feuerborn, T. R., France, C. A. M., Gopalakrishnan, S. & 13 others, Grimes, V., Harris, A., Kavich, G., Sacks, B. N., Sinding, M-H. S., Skoglund, P., Stanton, D. W. G., Ostrander, E. A., Larson, G., Armstrong, C. G., Frantz, L. A. F., Hawkins, M. T. R. & Kistler, L., 15 Dec 2023, In: Science. 382, 6676, p. 1303-1308 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1 Citation (Scopus)
  • Yersinia pestis genomes reveal plague in Britain 4000 years ago

    Swali, P., Schulting, R., Gilardet, A., Kelly, M., Anastasiadou, K., Glocke, I., McCabe, J., Williams, M., Audsley, T., Loe, L., Fernández-Crespo, T., Ordoño, J., Walker, D., Clare, T., Cook, G., Hodkinson, I., Simpson, M., Read, S., Davy, T., Silva, M. & 4 others, Hajdinjak, M., Bergström, A., Booth, T. & Skoglund, P., 30 May 2023, In: Nature Communications. 14, 1, 2930.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    2 Citations (Scopus)
    2 Downloads (Pure)
  • 2022

    Grey wolf genomic history reveals a dual ancestry of dogs

    Bergström, A., Stanton, D. W. G., Taron, U. H., Frantz, L., Sinding, M-H. S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D. M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M. V., Ramos-Madrigal, J., Feuerborn, T. R., Reiter, E., Gretzinger, J., Münzel, S. C. & 61 others, Swali, P., Conard, N. J., Carøe, C., Haile, J., Linderholm, A., Androsov, S., Barnes, I., Baumann, C., Benecke, N., Bocherens, H., Brace, S., Carden, R. F., Drucker, D. G., Fedorov, S., Gasparik, M., Germonpré, M., Grigoriev, S., Groves, P., Hertwig, S. T., Ivanova, V. V., Janssens, L., Jennings, R. P., Kasparov, A. K., Kirillova, I. V., Kurmaniyazov, I., Kuzmin, Y. V., Kosintsev, P. A., Lázničková-Galetová, M., Leduc, C., Nikolskiy, P., Nussbaumer, M., O’Drisceoil, C., Orlando, L., Outram, A., Pavlova, E. Y., Perri, A. R., Pilot, M., Pitulko, V. V., Plotnikov, V. V., Protopopov, A. V., Rehazek, A., Sablin, M., Seguin-Orlando, A., Storå, J., Verjux, C., Zaibert, V. F., Zazula, G., Crombé, P., Hansen, A. J., Willerslev, E., Leonard, J. A., Götherström, A., Pinhasi, R., Schuenemann, V. J., Hofreiter, M., Gilbert, M. T. P., Shapiro, B., Larson, G., Krause, J., Dalén, L. & Skoglund, P., 14 Jul 2022, In: Nature. 607, 7918, p. 313-320 8 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    39 Citations (Scopus)
    4 Downloads (Pure)
  • 2021

    From domestication genomics towards molecular ecology of human environments

    Bergström, A., 2 Oct 2021, In: Journal of Anthropological Sciences. 99, p. 163-166 4 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment

    Gelabert, P., Sawyer, S., Bergström, A., Margaryan, A., Collin, T. C., Meshveliani, T., Belfer-Cohen, A., Lordkipanidze, D., Jakeli, N., Matskevich, Z., Bar-Oz, G., Fernandes, D. M., Cheronet, O., Özdoğan, K. T., Oberreiter, V., Feeney, R. N. M., Stahlschmidt, M. C., Skoglund, P. & Pinhasi, R., 23 Aug 2021, In: Current Biology. 31, 16, p. 3564-3574.e9

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    18 Citations (Scopus)
    1 Downloads (Pure)
  • Million-year-old DNA sheds light on the genomic history of mammoths

    van der Valk, T., Pečnerová, P., Díez-del-Molino, D., Bergström, A., Oppenheimer, J., Hartmann, S., Xenikoudakis, G., Thomas, J. A., Dehasque, M., Sağlıcan, E., Fidan, F. R., Barnes, I., Liu, S., Somel, M., Heintzman, P. D., Nikolskiy, P., Shapiro, B., Skoglund, P., Hofreiter, M., Lister, A. M. & 2 others, Götherström, A. & Dalén, L., 11 Mar 2021, In: Nature. 591, 7849, p. 265-269 5 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    148 Citations (Scopus)
    1 Downloads (Pure)
  • Origins of modern human ancestry

    Bergström, A., Stringer, C., Hajdinjak, M., Scerri, E. M. L. & Skoglund, P., 10 Feb 2021, In: Nature. 590, 7845, p. 229-237 9 p.

    Research output: Contribution to journalArticlepeer-review

    131 Citations (Scopus)
  • 2020

    Archaeological Central American maize genomes suggest ancient gene flow from South America

    Kistler, L., Thakar, H. B., VanDerwarker, A. M., Domic, A., Bergström, A., George, R. J., Harper, T. K., Allaby, R. G., Hirth, K. & Kennett, D. J., 14 Dec 2020, In: Proceedings of the National Academy of Sciences. 117, 52, p. 33124-33129 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    29 Citations (Scopus)
  • Insights into human genetic variation and population history from 929 diverse genomes

    Bergström, A., McCarthy, S. A., Hui, R., Almarri, M. A., Ayub, Q., Danecek, P., Chen, Y., Felkel, S., Hallast, P., Kamm, J., Blanché, H., Deleuze, J-F., Cann, H., Mallick, S., Reich, D., Sandhu, M. S., Skoglund, P., Scally, A., Xue, Y., Durbin, R. & 1 others, Tyler-Smith, C., 20 Mar 2020, In: Science. 367, 6484, aay5012.

    Research output: Contribution to journalArticlepeer-review

    347 Citations (Scopus)
  • Origins and genetic legacy of prehistoric dogs

    Bergström, A., Frantz, L., Schmidt, R., Ersmark, E., Lebrasseur, O., Girdland-Flink, L., Lin, A. T., Storå, J., Sjögren, K-G., Anthony, D., Antipina, E., Amiri, S., Bar-Oz, G., Bazaliiskii, V. I., Bulatović, J., Brown, D., Carmagnini, A., Davy, T., Fedorov, S., Fiore, I. & 36 others, Fulton, D., Germonpré, M., Haile, J., Irving-Pease, E. K., Jamieson, A., Janssens, L., Kirillova, I., Horwitz, L. K., Kuzmanovic-Cvetković, J., Kuzmin, Y., Losey, R. J., Dizdar, D. L., Mashkour, M., Novak, M., Onar, V., Orton, D., Pasarić, M., Radivojević, M., Rajković, D., Roberts, B., Ryan, H., Sablin, M., Shidlovskiy, F., Stojanović, I., Tagliacozzo, A., Trantalidou, K., Ullén, I., Villaluenga, A., Wapnish, P., Dobney, K., Götherström, A., Linderholm, A., Dalén, L., Pinhasi, R., Larson, G. & Skoglund, P., 30 Oct 2020, In: Science. 370, 6516, p. 557-564 8 p.

    Research output: Contribution to journalArticlepeer-review

    122 Citations (Scopus)
  • Population structure, stratification, and introgression of human structural variation

    Almarri, M. A., Bergström, A., Prado-Martinez, J., Yang, F., Fu, B., Dunham, A. S., Chen, Y., Hurles, M. E., Tyler-Smith, C. & Xue, Y., 9 Jul 2020, In: Cell. 182, 1, p. 189-199.e15 11 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    46 Citations (Scopus)
  • 2019

    Uganda genome resource enables insights into population history and genomic discovery in Africa

    Gurdasani, D., Carstensen, T., Fatumo, S., Chen, G., Franklin, C. S., Prado-Martinez, J., Bouman, H., Abascal, F., Haber, M., Tachmazidou, I., Mathieson, I., Ekoru, K., DeGorter, M. K., Nsubuga, R. N., Finan, C., Wheeler, E., Chen, L., Cooper, D. N., Schiffels, S., Chen, Y. & 37 others, Ritchie, G. R. S., Pollard, M. O., Fortune, M. D., Mentzer, A. J., Garrison, E., Bergström, A., Hatzikotoulas, K., Adeyemo, A., Doumatey, A., Elding, H., Wain, L. V., Ehret, G., Auer, P. L., Kooperberg, C. L., Reiner, A. P., Franceschini, N., Maher, D., Montgomery, S. B., Kadie, C., Widmer, C., Xue, Y., Seeley, J., Asiki, G., Kamali, A., Young, E. H., Pomilla, C., Soranzo, N., Zeggini, E., Pirie, F., Morris, A. P., Heckerman, D., Tyler-Smith, C., Motala, A., Rotimi, C., Kaleebu, P., Barroso, I. & Sandhu, M. S., 31 Oct 2019, In: Cell. 179, 4, p. 984-1002.e36 19 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    107 Citations (Scopus)
  • Y chromosome sequences reveal a short Beringian standstill, rapid expansion, and early population structure of Native American founders

    Pinotti, T., Bergström, A., Geppert, M., Bawn, M., Ohasi, D., Shi, W., Lacerda, D. R., Solli, A., Norstedt, J., Reed, K., Dawtry, K., González-Andrade, F., Paz-y-Miño, C., Revollo, S., Cuellar, C., Jota, M. S., Santos, J. E., Ayub, Q., Kivisild, T., Sandoval, J. R. & 5 others, Fujita, R., Xue, Y., Roewer, L., Santos, F. R. & Tyler-Smith, C., 7 Jan 2019, In: Current Biology. 29, 1, p. 149-157.e3 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    71 Citations (Scopus)
  • 2018

    Genome evolution across 1,011 Saccharomyces cerevisiae isolates

    Peter, J., Chiara, M. D., Friedrich, A., Yue, J-X., Pflieger, D., Bergström, A., Sigwalt, A., Barre, B., Freel, K., Llored, A., Cruaud, C., Labadie, K., Aury, J-M., Istace, B., Lebrigand, K., Barbry, P., Engelen, S., Lemainque, A., Wincker, P., Liti, G. & 1 others, Schacherer, J., 11 Apr 2018, In: Nature. 556, p. 339-344

    Research output: Contribution to journalArticlepeer-review

    597 Citations (Scopus)
  • Human genetics: Busy subway networks in remote Oceania?

    Bergström, A. & Tyler-Smith, C., 7 May 2018, In: Current Biology. 28, 9, p. R549-R551 3 p.

    Research output: Contribution to journalArticle

    Open Access
  • 2017

    A Neolithic expansion, but strong genetic structure, in the independent history of New Guinea

    Bergström, A., Oppenheimer, S. J., Mentzer, A. J., Auckland, K., Robson, K., Attenborough, R., Alpers, M. P., Koki, G., Pomat, W., Siba, P., Xue, Y., Sandhu, M. S. & Tyler-Smith, C., 15 Sep 2017, In: Science. 357, 6356, p. 1160-1163

    Research output: Contribution to journalArticlepeer-review

  • Clonal heterogeneity influences the fate of new adaptive mutations

    Vázquez-García, I., Salinas, F., Li, J., Fischer, A., Barré, B., Hallin, J., Bergström, A., Alonso-Perez, E., Warringer, J., Mustonen, V. & Liti, G., 17 Oct 2017, In: Cell Reports. 21, 3, p. 732-744 13 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Contrasting evolutionary genome dynamics between domesticated and wild yeasts

    Yue, J-X., Li, J., Aigrain, L., Hallin, J., Persson, K., Oliver, K., Bergström, A., Coupland, P., Warringer, J., Lagomarsino, M. C., Fischer, G., Durbin, R. & Liti, G., 17 Apr 2017, In: Nature Genetics. 49, p. 913-924

    Research output: Contribution to journalArticlepeer-review

    Open Access
    200 Citations (Scopus)
  • Copy number variation arising from gene conversion on the human Y chromosome

    Shi, W., Massaia, A., Louzada, S., Banerjee, R., Hallast, P., Chen, Y., Bergström, A., Gu, Y., Leonard, S., Quail, M. A., Ayub, Q., Yang, F., Tyler-Smith, C. & Xue, Y., 5 Dec 2017, In: Human Genetics. 137, p. 73-83

    Research output: Contribution to journalArticlepeer-review

    Open Access
    9 Citations (Scopus)
  • Y-chromosomal sequences of diverse Indian populations and the ancestry of the Andamanese

    Mondal, M., Bergström, A., Xue, Y., Calafell, F., Laayouni, H., Casals, F., Majumder, P. P., Tyler-Smith, C. & Bertranpetit, J., 25 Apr 2017, In: Human Genetics. 136, p. 499-510

    Research output: Contribution to journalArticlepeer-review

    16 Citations (Scopus)
  • 2016

    A genomic history of Aboriginal Australia

    Malaspinas, A-S., Westaway, M. C., Muller, C., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I. & 55 others, Eriksson, A., Margaryan, A., Moltke, I., Pugach, I., Korneliussen, T. S., Levkivskyi, I. P., Moreno-Mayar, J. V., Ni, S., Racimo, F., Sikora, M., Xue, Y., Aghakhanian, F. A., Brucato, N., Brunak, S., Campos, P. F., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E. A., McAllister, P. J., Mentzer, A. J., Metspalu, M., Migliano, A. B., Murgha, L., Phipps, M. E., Pomat, W., Reynolds, D., Ricaut, F-X., Siba, P., Thomas, M. G., Wales, T., Wall, C. M., Oppenheimer, S. J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M. H., Foley, R. A., Mirazón Lahr, M., Bowern, C., Wall, J. D., Mailund, T., Stoneking, M., Nielsen, R., Sandhu, M. S., Excoffier, L., Lambert, D. M. & Willerslev, E., 21 Sep 2016, In: Nature. 538, p. 207-214 8 p.

    Research output: Contribution to journalArticlepeer-review

    338 Citations (Scopus)
  • Chad genetic diversity reveals an African history marked by multiple Holocene Eurasian migrations

    Haber, M., Mezzavilla, M., Bergström, A., Prado-Martinez, J., Hallast, P., Saif-Ali, R., Al-Habori, M., Dedoussis, G., Zeggini, E., Blue-Smith, J., Wells, R. S., Xue, Y., Zalloua, PA. & Tyler-Smith, C., 1 Dec 2016, In: American Journal of Human Genetics. 99, 6, p. 1316-1324 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    28 Citations (Scopus)
  • Deep roots for Aboriginal Australian Y chromosomes

    Bergström, A., Nagle, N., Chen, Y., McCarthy, S., Pollard, MO., Ayub, Q., Wilcox, S., Wilcox, L., van Oorschot, RA. H., McAllister, P., Williams, L., Xue, Y., Mitchell, R. J. & Tyler-Smith, C., 21 Mar 2016, In: Current Biology. 26, 6, p. 809-813 5 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Extensive recombination of a yeast diploid hybrid through meiotic reversion

    Laureau, R., Loeillet, S., Salinas, F., Bergström, A., Legoix-Né, P., Liti, G. & Nicolas, A., 1 Feb 2016, In: PLoS Genetics. 12, 2, e1005781.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • 2015

    Genomic evidence for the Pleistocene and recent population history of Native Americans

    Raghavan, M., Steinrucken, M., Harris, K., Schiffels, S., Rasmussen, S., DeGiorgio, M., Albrechtsen, A., Valdiosera, C., Avila-Arcos, M. C., Malaspinas, A-S., Eriksson, A., Moltke, I., Metspalu, M., Homburger, J. R., Wall, J., Cornejo, O. E., Moreno-Mayar, J. V., Korneliussen, T. S., Pierre, T., Rasmussen, M. & 81 others, Campos, P. F., Damgaard, P. D. B., Allentoft, M. E., Lindo, J., Metspalu, E., Rodriguez-Varela, R., Mansilla, J., Henrickson, C., Seguin-Orlando, A., Malmstrom, H., Stafford, T., Shringarpure, S. S., Moreno-Estrada, A., Karmin, M., Tambets, K., Bergstrom, A., Xue, Y., Warmuth, V., Friend, A. D., Singarayer, J., Valdes, P., Balloux, F., Leboreiro, I., Vera, J. L., Rangel-Villalobos, H., Pettener, D., Luiselli, D., Davis, L. G., Heyer, E., Zollikofer, C. P. E., Leon, M. S. P. D., Smith, C. I., Grimes, V., Pike, K-A., Deal, M., Fuller, B. T., Arriaza, B., Standen, V., Luz, M. F., Ricaut, F., Guidon, N., Osipova, L., Voevoda, M. I., Posukh, O. L., Balanovsky, O., Lavryashina, M., Bogunov, Y., Khusnutdinova, E., Gubina, M., Balanovska, E., Fedorova, S., Litvinov, S., Malyarchuk, B., Derenko, M., Mosher, M. J., Archer, D., Cybulski, J., Petzelt, B., Mitchell, J., Worl, R., Norman, P. J., Parham, P., Kemp, B. M., Kivisild, T., Tyler-Smith, C., Sandhu, M. S., Crawford, M., Villems, R., Smith, D. G., Waters, M. R., Goebel, T., Johnson, J. R., Malhi, R. S., Jakobsson, M., Meltzer, D. J., Manica, A., Durbin, R., Bustamante, C. D., Song, Y. S., Nielsen, R. & Willerslev, E., 23 Jul 2015, In: Science. 349, 6250

    Research output: Contribution to journalArticlepeer-review

    358 Citations (Scopus)
  • 2014

    A high-definition view of functional genetic variation from natural yeast genomes

    Bergström, A., Simpson, J. T., Salinas, F., Barré, B., Parts, L., Zia, A., Nguyen Ba, A. N., Moses, A. M., Louis, E. J., Mustonen, V., Warringer, J., Durbin, R. & Liti, G., Apr 2014, In: Molecular Biology and Evolution. 31, 4, p. 872-888 17 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • 2013

    High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome

    Liti, G., Nguyen Ba, A. N., Blythe, M., Müller, C. A., Bergström, A., Cubillos, F. A., Dafhnis-Calas, F., Khoshraftar, S., Malla, S., Mehta, N., Siow, C. C., Warringer, J., Moses, A. M., Louis, E. J. & Nieduszynski, C. A., 31 Jan 2013, In: BMC Genomics. 14, 69.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    62 Citations (Scopus)
  • High-resolution mapping of complex traits with a four-parent advanced intercross yeast population

    Cubillos, F. A., Parts, L., Salinas, F., Bergström, A., Scovacricchi, E., Zia, A., Illingworth, C. J. R., Mustonen, V., Ibstedt, S., Warringer, J., Louis, E. J., Durbin, R. & Liti, G., 1 Nov 2013, In: Genetics. 195, 3, p. 1141–1155 15 p.

    Research output: Contribution to journalArticlepeer-review

    93 Citations (Scopus)
  • Inferring genome-wide recombination landscapes from advanced intercross lines: Application to yeast crosses

    Illingworth, C. J. R., Parts, L., Bergström, A., Liti, G. & Mustonen, V., 2 May 2013, In: PLoS One. 8, 5, e62266.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    20 Citations (Scopus)
  • 2012

    The genetic basis of natural variation in oenological traits in Saccharomyces cerevisiae

    Salinas, F., Cubillos, F. A., Soto, D., Garcia, V., Bergström, A., Warringer, J., Ganga, M. A., Louis, E. J., Liti, G. & Martinez, C., 21 Nov 2012, In: PLoS One. 7, 11, e49640.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    65 Citations (Scopus)