Search results

• 2023

  Extracting abundance information from DNA‐based data

  Luo, M., Yinqiu, J., Warton, D. & Yu, D. W., Jan 2023, In: Molecular Ecology Resources. 23, 1, p. 174-189 16 p.

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• 2022

  Climate-induced forest dieback drives compositional changes in insect communities that are more pronounced for rare species

  Sire, L., Yáñez, P. S., Wang, C., Bézier, A., Courtial, B., Cours, J., Fontaneto, D., Larrieu, L., Bouget, C., Thorn, S., Müller, J., Yu, D. W., Monaghan, M. T., Herniou, E. A. & Lopez-Vaamonde, C., 18 Jan 2022, In: Communications Biology. 5, 1, 57.

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  3 Citations (Scopus)

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• Measuring protected-area effectiveness using vertebrate distributions from leech iDNA

  Ji, Y., Baker, C. C. M., Popescu, V. D., Wang, J., Wu, C., Wang, Z., Li, Y., Wang, L., Hua, C., Yang, Z., Yang, C., Xu, C. C. Y., Diana, A., Wen, Q., Pierce, N. E. & Yu, D. W., 23 Mar 2022, In: Nature Communications. 13, 1, 1555 .

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• Phylogenetic diversity only weakly mitigates climate‐change‐driven biodiversity loss in insect communities

  Li, Z., Linard, B., Vogler, A. P., Yu, D. W. & Wang, Z., 22 Oct 2022, (E-pub ahead of print) In: Molecular Ecology.

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• Strategies for sample labelling and library preparation in DNA metabarcoding studies

  Bohmann, K., Elbrecht, V., Carøe, C., Bista, I., Leese, F., Bunce, M., Yu, D. W., Seymour, M., Dumbrell, A. J. & Creer, S., May 2022, In: Molecular Ecology Resources. 22, 4, p. 1231-1246 16 p.

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• 2021

  Accounting for species interactions is necessary for predicting how arctic arthropod communities respond to climate change

  Abrego, N., Roslin, T., Huotari, T., Ji, Y., Schmidt, N. M., Wang, J., Yu, D. W. & Ovaskainen, O., Jun 2021, In: Ecography. 44, 6, p. 885-896 12 p.

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  9 Citations (Scopus)

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• Biodiversity Soup II: A bulk‐sample metabarcoding pipeline emphasizing error reduction

  Yang, C., Bohmann, K., Wang, X., Cai, W., Wales, N., Ding, Z., Gopalakrishnan, S. & Yu, D. W., Jul 2021, In: Methods in Ecology and Evolution. 12, 7, p. 1252-1264 13 p.

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  11 Citations (Scopus)

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• Competition-based screening helps to secure the evolutionary stability of a defensive microbiome

  Worsley, S. F., Innocent, T. M., Holmes, N. A., Al-Bassam, M. M., Schiøtt, M., Wilkinson, B., Murrell, J. C., Boomsma, J. J., Yu, D. W. & Hutchings, M. I., 15 Sep 2021, In: BMC Biology. 19, 1, 205.

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• Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis

  Arribas, P., Andújar, C., Bidartondo, M. I., Bohmann, K., Coissac, É., Creer, S., Dewaard, J. R., Elbrecht, V., Ficetola, G. F., Goberna, M., Kennedy, S., Krehenwinkel, H., Leese, F., Novotny, V., Ronquist, F., Yu, D. W., Zinger, L., Creedy, T. J., Meramveliotakis, E., Noguerales, V. & 5 others, Overcast, I., Morlon, H., Vogler, A. P., Papadopoulou, A. & Emerson, B. C., Mar 2021, In: Molecular Ecology. 30, 5, p. 1120-1135 16 p.

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• The ecological impact of pest-induced tree dieback on insect biodiversity in Yunnan pine plantations, China

  Cai, W., Yang, C., Wang, X., Wu, C., Larrieu, L., Lopez-Vaamonde, C., Wen, Q. & Yu, D. W., 1 Jul 2021, In: Forest Ecology and Management. 491, 119173.

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• 2020

  DNA-based arthropod diversity assessment in Amazonian iron mine lands show ecological succession towards undisturbed reference sites

  Lynggaard, C., Yu, D. W., Oliveira, G., Caldeira, C. F., Ramos, S. J., Ellegaard, M. R., Gilbert, M. T. P., Gastauer, M. & Bohmann, K., 1 Dec 2020, In: Frontiers in Ecology and Evolution. 8, 590976.

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• Environmental DNA facilitates accurate, inexpensive, and multi‐year population estimates of millions of anadromous fish

  Pochardt, M., Allen, J. M., Hart, T., Miller, S. D. L., Yu, D. W. & Levi, T., Mar 2020, In: Molecular Ecology Resources. 20, 2, p. 457-467 11 p.

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• Horizon scan of the Belt and Road Initiative

  Hughes, A. C., Lechner, A. M., Chitov, A., Horstmann, A., Hinsley, A., Tritto, A., Chariton, A., Li, B. V., Ganapin, D., Simonov, E., Morton, K., Toktomushev, K., Foggin, M., Tan-Mullins, M., Orr, M. C., Griffiths, R., Nash, R., Perkin, S., Glémet, R., Kim, M. & 1 others, Yu, D. W., Jul 2020, In: Trends in Ecology & Evolution. 35, 7, p. 583-593 11 p.

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• SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes

  Ji, Y., Huotari, T., Roslin, T., Schmidt, N. M., Wang, J., Yu, D. W. & Ovaskainen, O., Jan 2020, In: Molecular Ecology Resources. 20, 1, p. 256-267 12 p.

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  37 Citations (Scopus)

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• The life history of human foraging: Cross-cultural and individual variation

  Koster, J., McElreath, R., Hill, K., Yu, D., Shepard, G., Van Vliet, N., Gurven, M., Trumble, B., Bird, R. B., Bird, D., Codding, B., Coad, L., Pacheco-Cobos, L., Winterhalder, B., Lupo, K., Schmitt, D., Sillitoe, P., Franzen, M., Alvard, M., Venkataraman, V. & 21 others, Kraft, T., Endicott, K., Beckerman, S., Marks, S. A., Headland, T., Pangau-Adam, M., Siren, A., Kramer, K., Greaves, R., Reyes-García, V., Guèze, M., Duda, R., Fernández-Llamazares, Á., Gallois, S., Napitupulu, L., Ellen, R., Ziker, J., Nielsen, M. R., Ready, E., Healey, C. & Ross, C., 24 Jun 2020, In: Science Advances. 6, 26, eaax9070.

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  26 Citations (Scopus)

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• 2019

  An efficient and robust laboratory workflow and tetrapod database for larger scale environmental DNA studies

  Axtner, J., Crampton-Platt, A., Hörig, L. A., Mohamed, A., Xu, C. C. Y., Yu, D. W. & Wilting, A., Apr 2019, In: GigaScience. 8, 4, giz029.

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  27 Citations (Scopus)

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• Efficient assembly and long-term stability of defensive microbiomes via private resources and community bistability

  Boza, G., Worsley, S. F., Yu, D. W. & Scheuring, I., 31 May 2019, In: PLoS Computational Biology. 15, 5, e1007109.

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  3 Citations (Scopus)

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• Environmental DNA for the enumeration and management of Pacific salmon

  Levi, T., Allen, J. M., Bell, D., Joyce, J., Russell, J. R., Tallmon, D. A., Vulstek, S. C., Yang, C. & Yu, D. W., May 2019, In: Molecular Ecology Resources. 19, 3, p. 597-608 12 p.

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  49 Citations (Scopus)

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• Semi‐quantitative characterisation of mixed pollen samples using MinION sequencing and Reverse Metagenomics (RevMet)

  Peel, N., Dicks, L. V., Clark, M. D., Heavens, D., Percival-Alwyn, L., Cooper, C. E., Davies, R. G., Leggett, R. M. & Yu, D., 1 Oct 2019, In: Methods in Ecology and Evolution. 10, 10, p. 1690–1701 12 p.

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  22 Citations (Scopus)

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• Shifting up a gear with iDNA: From mammal detection events to standardised surveys

  Abrams, J. F., Hörig, L. A., Brozovic, R., Axtner, J., Crampton-Platt, A., Mohamed, A., Wong, S. T., Sollmann, R., Yu, D. W. & Wilting, A., Jul 2019, In: Journal of Applied Ecology. 56, 7, p. 1637-1648

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  30 Citations (Scopus)

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• The biodiversity benefit of native forests and mixed-species plantations over monoculture plantations

  Wang, X., Hua, F., Wang, L., Wilcove, D. S. & Yu, D. W., Nov 2019, In: Diversity and Distributions. 25, 11, p. 1721-1735

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  32 Citations (Scopus)

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• The devil is in the detail: Metabarcoding of arthropods provides a sensitive measure of biodiversity response to forest stand composition compared with surrogate measures of biodiversity

  Barsoum, N., Bruce, C., Forster, J., Ji, Y. Q. & Yu, D. W., Jun 2019, In: Ecological Indicators. 101, p. 313-323 11 p.

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  29 Citations (Scopus)

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• 2018

  Bloodlines: mammals, leeches, and conservation in southern Asia

  Tessler, M., Weiskopf, S. R., Berniker, L., Hersch, R., Mccarthy, K. P., Yu, D. W. & Siddall, M. E., Jun 2018, In: Systematics and Biodiversity. 16, 5, p. 488-496

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  34 Citations (Scopus)

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• Chemical warfare between leafcutter ant symbionts and a co-evolved pathogen

  Heine, D., Holmes, N. A., Worsley, S. F., Santos, A. C. A., Innocent, T. M., Scherlach, K., Patrick, E. H., Yu, D. W., Murrell, J. C., Viera, P. C., Boomsma, J. J., Hertweck, C., Hutchings, M. I. & Wilkinson, B., 7 Jun 2018, In: Nature Communications. 9, 2208.

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  43 Citations (Scopus)

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• Debugging diversity - a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool

  Schnell, I. B., Bohmann, K., Schultze, S. E., Richter, S. R., Murray, D. C., Sinding, M-H. S., Bass, D., Cadle, J. E., Campbell, M. J., Dolch, R., Edwards, D. P., Gray, T. N. E., Hansen, T., Hoa, A. N. Q., Noer, C. L., Heise-Pavlov, S., Sander Pedersen, A. F., Ramamonjisoa, J. C., Siddall, M. E., Tilker, A. & 7 others, Traeholt, C., Wilkinson, N., Woodcock, P., Yu, D. W., Bertelsen, M. F., Bunce, M. & Gilbert, M. T. P., Nov 2018, In: Molecular Ecology Resources. 18, 6, p. 1282-1298 17 p.

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  35 Citations (Scopus)

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• Metabarcoding of freshwater invertebrates to detect the effects of a pesticide spill

  Andújar, C., Arribas, P., Gray, C., Bruce, C., Woodward, G., Yu, D. W. & Vogler, A. P., Jan 2018, In: Molecular Ecology. 27, 1, p. 146–166 21 p.

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  48 Citations (Scopus)

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• The genetic basis of a social polymorphism in halictid bees

  Kocher, S. D., Mallarino, R., Rubin, B. E. R., Yu, D. W., Hoekstra, H. E. & Pierce, N. E., 18 Oct 2018, In: Nature Communications. 9, 4338.

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  41 Citations (Scopus)

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• Tree plantations displacing native forests: The nature and drivers of apparent forest recovery on former croplands in Southwestern China from 2000 to 2015

  Hua, F., Wang, L., Fisher, B., Zheng, X., Wang, X., Yu, D. W., Tang, Y., Zhu, J. & Wilcove, D. S., 1 Jun 2018, In: Biological Conservation. 222, p. 113-124 12 p.

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  53 Citations (Scopus)

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• Why the COI barcode should be the community DNA metabarcode for the Metazoa

  Andújar, C., Arribas, P., Yu, D. W., Vogler, A. P. & Emerson, B. C., Oct 2018, In: Molecular Ecology. 27, 20, p. 3968-3975

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  88 Citations (Scopus)

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• 2017

  Carrion fly-derived DNA metabarcoding is an effective tool for mammal surveys: Evidence from a known tropical mammal community

  Rodgers, T. W., Xu, C. C. Y., Giacalone, J., Kapheim, K. M., Saltonstall, K., Vargas, M., Yu, D. W., Somervuo, P., McMillan, W. O. & Jansen, P. A., Nov 2017, In: Molecular Ecology Resources. 17, 6, p. e133–e145 13 p.

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  40 Citations (Scopus)

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• Connecting Earth observation to high-throughput biodiversity data

  Bush, A., Sollmann, R., Wilting, A., Bohmann, K., Cole, B., Balzter, H., Martius, C., Zlinszky, A., Calvignac-Spencer, S., Cobbold, C. A., Dawson, T. P., Emerson, B. C., Ferrier, S., Gilbert, M. T. P., Herold, M., Jones, L., Leendertz, F. H., Matthews, L., Millington, J. D. A., Olson, J. R. & 11 others, Ovaskainen, O., Raffaelli, D., Reeve, R., Rödel, M-O., Rodgers, T. W., Snape, S., Visseren-Hamakers, I., Vogler, A. P., White, P. C. L., Wooster, M. J. & Yu, D. W., 22 Jun 2017, In: Nature Ecology & Evolution. 2017, 1, 0176.

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  118 Citations (Scopus)

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• Quantifying uncertainty of taxonomic placement in DNA barcoding and metabarcoding

  Somervuo, P., Yu, D. W., Xu, C. C. Y., Ji, Y., Hultman, J., Wirta, H. & Ovaskainen, O., 10 Apr 2017, In: Methods in Ecology and Evolution. 8, p. 398-407 10 p.

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  43 Citations (Scopus)

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• The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project

  Hudson, L. N., Peres, C. A. & Yu, D. W., Jan 2017, In: Ecology and Evolution. 7, 1, p. 145–188

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  111 Citations (Scopus)

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• Using eDNA to detect the distribution and density of invasive crayfish in the Honghe-Hani rice terrace World Heritage site

  Cai, W., Ma, Z., Yang, C., Wang, L., Wang, W., Zhao, G., Geng, Y. & Yu, D. W., 15 May 2017, In: PLoS One. 12, 5, e0177724.

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  28 Citations (Scopus)

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• 2016

  Cost-effective scat-detection dogs: unleashing a powerful new tool for international mammalian conservation biology

  Orkin, J. D., Yang, Y., Yang, C., Yu, D. W. & Jiang, X., 10 Oct 2016, In: Scientific Reports. 6, 34758.

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  39 Citations (Scopus)

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• Genome analysis of two Pseudonocardia phylotypes associated with Acromyrmex leafcutter ants reveals their biosynthetic potential

  Holmes, N. A., Innocent, T. M., Heine, D., Al-Bassam, M., Worsley, S. F., Trottman, F., Patrick, E. H., Yu, D. W., Murrell, J. C., Schiott, M., Wilkinson, B., Boomsma, J. J. & Hutchings, M. I., 8 Dec 2016, In: Frontiers in Microbiology. 7, 2073.

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  31 Citations (Scopus)

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• Higher fungal diversity is correlated with lower CO₂ emissions from dead wood in a natural forest

  Yang, C., Schaefer, D. A., Liu, W., Popescu, V. D., Yang, C., Wang, X., Wu, C. & Yu, D. W., 24 Aug 2016, In: Scientific Reports. 6, 31066.

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  24 Citations (Scopus)

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• Mitochondrial metagenomics: letting the genes out of the bottle

  Crampton-Platt, A., Yu, D. W., Zhou, X. & Vogler, A. P., Dec 2016, In: GigaScience. 5, 1, 15.

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  79 Citations (Scopus)

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• Opportunities for biodiversity gains under the world’s largest reforestation programme

  Hua, F., Wang, X., Zheng, X., Fisher, B., Wang, L., Zhu, J., Tang, Y., Yu, D. W. & Wilcove, D. S., 6 Sep 2016, In: Nature Communications. 7, 12717.

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  174 Citations (Scopus)

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• Plant diversity accurately predicts insect diversity in two tropical landscapes

  Zhang, K., Lin, S., Ji, Y., Yang, C., Wang, X., Yang, C., Wang, H., Jiang, H., Harrison, R. D. & Yu, D. W., Sep 2016, In: Molecular Ecology. 25, 17, p. 4407–4419 13 p.

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  50 Citations (Scopus)

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• 2015

  Effectiveness of China's National Forest Protection Program and nature reserves

  Ren, G., Young, S. S., Wang, L., Wang, W., Long, Y., Wu, R., Li, J., Zhu, J. & Yu, D. W., Oct 2015, In: Conservation Biology. 29, 5, p. 1368-1377 10 p.

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  117 Citations (Scopus)

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• High-throughput monitoring of wild bee diversity and abundance via mitogenomics

  Tang, M., Hardman, C. J., Ji, Y., Meng, G., Liu, S., Tan, M., Yang, S., Moss, E. D., Wang, J., Yang, C., Bruce, C., Nevard, T., Potts, S. G., Zhou, X. & Yu, D. W., Sep 2015, In: Methods in Ecology and Evolution. 6, 9, p. 1034-1043 10 p.

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  104 Citations (Scopus)

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• iDNA from terrestrial haematophagous leeches as a wildlife surveying and monitoring tool - prospects, pitfalls and avenues to be developed

  Schnell, I. B., Sollmann, R., Calvignac-Spencer, S., Siddall, M. E., Yu, D. W., Wilting, A. & Gilbert, M. T. P., Oct 2015, In: Frontiers in Zoology. 12, 14 p.

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  72 Citations (Scopus)

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• 2014

  China's transboundary waters: new paradigms for water and ecological security through applied ecology

  He, D., Wu, R., Feng, Y., Li, Y., Ding, C., Wang, W. & Yu, D. W., Oct 2014, In: Journal of Applied Ecology. 51, 5, p. 1159-1168

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  57 Citations (Scopus)

• Environmental DNA for wildlife biology and biodiversity monitoring

  Bohmann, K., Evans, A., Gilbert, M. T. P., Carvalho, G. R., Creer, S., Knapp, M., Yu, D. W. & De Bruyn, M., 1 Jun 2014, In: Trends in Ecology & Evolution. 29, 6, p. 358-367 10 p.

  Research output: Contribution to journal › Article › peer-review
  670 Citations (Scopus)

• Evidence that the Tibetan fox is an obligate predator of the plateau pika: conservation implications

  Harris, R. B., Jiake, Z., Yinqiu, J., Kai, Z., Chunyan, Y. & Yu, D. W., 1 Dec 2014, In: Journal of Mammalogy. 95, 6, p. 1207-1221

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  24 Citations (Scopus)

• Filipins: the first antifungal “weed killers” identified from bacteria isolated from the trap-ant

  Gao, H., Grüschow, S., Barke, J., Seipke, R. F., Hill, L. M., Orivel, J., Yu, D. W., Hutchings, M. & Goss, R. J. M., 27 Oct 2014, In: RSC Advances. 4, 100, p. 57267-57270

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  18 Citations (Scopus)

• Human preferences for sexually dimorphic faces may be evolutionarily novel

  Scott, I. M., Clark, A. P., Josephson, S. C., Boyette, A. H., Cuthill, I. C., Fried, R. L., Gibson, M. A., Hewlett, B. S., Jamieson, M., Jankowiak, W., Honey, P. L., Huang, Z., Liebert, M. A., Purzycki, B. G., Shaver, J. H., Snodgrass, J. J., Sosis, R., Sugiyama, L. S., Swami, V., Yu, D. W. & 2 others, Zhao, Y. & Penton-voak, I. S., 7 Oct 2014, In: Proceedings of the National Academy of Sciences of the United States of America (PNAS). 111, 40, p. 14388-14393

  Research output: Contribution to journal › Article › peer-review

• Selective-logging and oil palm: multitaxon impacts, biodiversity indicators, and trade-offs for conservation planning

  Edwards, D. P., Magrach, A., Woodcock, P., Ji, Y., Lim, N. T., Edwards, F. A., Larsen, T. H., Hsu, W. W., Benedick, S., Khen, C. V., Chung, A. Y. C., Reynolds, G., Fisher, B., Laurance, W. F., Wilcove, D. S., Hamer, K. C. & Yu, D. W., 1 Dec 2014, In: Ecological Applications. 24, 8, p. 2029-2049

  Research output: Contribution to journal › Article › peer-review
  79 Citations (Scopus)

• The current and future value of nature-based tourism in the Eastern Arc Mountains of Tanzania

  Bayliss, J., Schaafsma, M., Balmford, A., Burgess, N. D., Green, J. M. H., Madoffe, S. S., Okayasu, S., Peh, K. S., Platts, P. J. & Yu, D. W., 1 Jun 2014, In: Ecosystem Services. 8, p. 75-83

  Research output: Contribution to journal › Article › peer-review
  20 Citations (Scopus)