Search results

• 2024

  RT-PCR genotyping assays to identify SARS-CoV-2 variants in England in 2021: A design and retrospective evaluation study

  Bray, N., Sopwith, W., Edmunds, M., Vansteenhouse, H., Feenstra, J. D. M., Jacobs, P., Rajput, K., O'Connell, A. M., Smith, M. L., Blomquist, P., Hatziioanou, D., Elson, R., Vivancos, R., Gallagher, E., Wigglesworth, M. J., Dominiczak, A., Hopkins, S. & Lake, I. R., Feb 2024, In: The Lancet Microbe. 5, 2, p. e173-e180 8 p.

  Research output: Contribution to journal › Article › peer-review

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  4 Citations (Scopus)

  10 Downloads (Pure)

• Stemming the rising tide of Vibrio disease

  Baker-Austin, C., Lake, I., Archer, E., Hartnell, R., Trinanes, J. & Martinez-Urtaza, J., Jul 2024, In: The Lancet Planetary Health. 8, 7, p. e515-e520

  Research output: Contribution to journal › Review article › peer-review

  Open Access

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• 2023

  Animal and environmental risk factors for sporadic Shiga toxin-producing Escherichia coli (STEC) infection in England: A case control study for O157, O26 and other STEC serotypes

  Kintz, E., Brainard, J., Vanderes, M., Vivancos, R., Byrne, L., Butt, S., Jenkins, C., Elson, R., Lake, I. & Hunter, P., Sep 2023, In: Pathogens and Global Health. 117, 7, p. 655-663 9 p.

  Research output: Contribution to journal › Article › peer-review

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  2 Citations (Scopus)

  16 Downloads (Pure)

• Animal and environmental risk factors for sporadic Shiga toxin-producing Escherichia coli (STEC) infection in England: A case control study for O157, O26 and other STEC serotypes

  Kintz, E., Brainard, J., Vanderes, M., Vivancos, R., Byrne, L., Butt, S., Jenkins, C., Elson, R., Lake, I. & Hunter, P., 9 May 2023.

  Research output: Contribution to conference › Poster › peer-review

  Open Access

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• Climate warming and increasing Vibrio vulnificus infections in North America

  Archer, E. J., Baker-Austin, C., Osborn, T. J., Jones, N. R., Martinez-Urtaza, J., Trinanes, J. A., Oliver, J. D., Colón González, F. J. & Lake, I. R., 23 Mar 2023, In: Scientific Reports. 13, 3893.

  Research output: Contribution to journal › Article › peer-review

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  38 Citations (Scopus)

  9 Downloads (Pure)

• Comparison of surveillance systems for monitoring COVID-19 in England: A retrospective observational study

  Brainard, J., Lake, I. R., Morbey, R. A., Jones, N. R., Elliot, A. J. & Hunter, P. R., Nov 2023, In: The Lancet Public Health. 8, 11, p. E850-E858 9 p.

  Research output: Contribution to journal › Article › peer-review

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  2 Citations (Scopus)

  11 Downloads (Pure)

• Comparison of UK surveillance systems for monitoring COVID-19: Lessons for disease surveillance

  Brainard, J., Lake, I., Jones, N., Morbey, R. A., Elliot, A. J. & Hunter, P., 15 Nov 2023.

  Research output: Contribution to conference › Paper

  Open Access

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  10 Downloads (Pure)

• Effectiveness of filtering or decontaminating air to reduce or prevent respiratory infections: A systematic review

  Brainard, J., Jones, N. R., Swindells, I. C., Archer, E. J., Kolyva, A., Letley, C., Pond, K., Lake, I. R. & Hunter, P. R., Dec 2023, In: Preventive Medicine. 177, 107774.

  Research output: Contribution to journal › Review article › peer-review

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  2 Citations (Scopus)

  14 Downloads (Pure)

• English care home staff morale and preparedness during the Covid pandemic: A longitudinal analysis

  Brainard, J., Bunn, D., Watts, L., Killett, A., O'Brien, S. J., Lake, I. R., Mumford, S. & Lane, K., Jul 2023, In: American Journal of Infection Control. 51, 7, p. 792-799 8 p.

  Research output: Contribution to journal › Article › peer-review

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  1 Citation (Scopus)

  9 Downloads (Pure)

• Super-spreaders of novel coronaviruses that cause SARS, MERS and COVID-19: A systematic review

  Brainard, J., Jones, N. R., Harrison, F. C. D., Hammer, C. C. & Lake, I. R., Jun 2023, In: Annals of Epidemiology. 82, p. 66-76.e6 11 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

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  4 Citations (Scopus)

  13 Downloads (Pure)

• Sustaining disaster aid in the onset of the COVID-19 pandemic

  Jones, N., Few, R., Lake, I. & Wooster, K., 2023, In: Journal of Emergency Management. 21, 7, p. 85-96 12 p.

  Research output: Contribution to journal › Article › peer-review

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  1 Citation (Scopus)

  11 Downloads (Pure)

• The transfer of environmental contaminants (brominated and chlorinated dioxins and biphenyls, PBDEs, HBCDDs, PCNs and PFAS) from recycled materials used for bedding to the eggs and tissues of chickens

  Fernandes, A. R., Lake, I., Dowding, A., Rose, M., Jones, N., Smith, F. & Panton, S., 20 Sep 2023, In: Science of the Total Environment. 892, 164441.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  5 Citations (Scopus)

  4 Downloads (Pure)
• 2022

  A multi-variate time series clustering approach based on intermediate fusion: A case study in air pollution data imputation

  Alahamade, W., Lake, I., Reeves, C. E. & De La Iglesia, B., 14 Jun 2022, In: Neurocomputing. 490, p. 229-245 17 p.

  Research output: Contribution to journal › Article › peer-review

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  9 Citations (Scopus)

  13 Downloads (Pure)

• Enhancing epidemiological surveillance of the emergence of the SARS-CoV-2 Omicron variant using spike gene target failure data, England, 15 November to 31 December 2021

  Blomquist, P. B., Bridgen, J., Bray, N., O'Connell, A. M., West, D., Groves, N., Gallagher, E., Utsi, L., Jarvis, C. I., Hardstaff, J. L., Byers, C., Metelmann, S., Simons, D., Zaidi, A., Twohig, K. A., Savagar, B., Løchen, A., Ryan, C., Wrenn, K., Saavedra-Campos, M., & 6 othersAbedin, Z., Florence, I., Cleary, P., Elson, R., Vivancos, R. & Lake, I. R., 17 Mar 2022, In: Eurosurveillance. 27, 11, 2200143.

  Research output: Contribution to journal › Article › peer-review

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  7 Citations (Scopus)

  10 Downloads (Pure)

• Mental health presentations across healthcare setting during the first 9 months of the COVID-19 pandemic in England: Retrospective observational study

  Smith, G. E., Harcourt, S. E., Hoang, U., Lemanska, A., Elliott, A. J., Morbey, R. A., Hughes, H. E., Lake, I., Edeghere, O., Oliver, I., Sherlock, J., Amlôt, R. & de Lusignan, S., 3 Aug 2022, In: Journal of Medical Internet Research. 8, 8, e32347.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  4 Citations (Scopus)

  6 Downloads (Pure)

• Risk perception from the consumption of untreated drinking water in a small island community

  Nik Hassan, N. M. N., Hunter, P. R. & Lake, I. R., 1 Oct 2022, In: Journal of Water and Health. 20, 10, p. 1506-1516 11 p.

  Research output: Contribution to journal › Article › peer-review

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  1 Citation (Scopus)

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• 2021

  Barriers and facilitators to reducing COVID-19 transmission in care homes: a qualitative exploration and survey

  Lane, K., Lake, I., Brainard, J., Salter, C. & Bunn, D., 8 Jul 2021, p. 136. 1 p.

  Research output: Contribution to conference › Paper › peer-review

• Concentrations of organic contaminants in industrial and municipal bioresources recycled in agriculture in the UK

  Rigby, H., Dowding, A., Fernandes, A., Humphries, D., Jones, N. R., Lake, I., Petch, R. G., Reynolds, C. K., Rose, M. & Smith, S. R., 15 Apr 2021, In: Science of the Total Environment. 765, 142787.

  Research output: Contribution to journal › Article › peer-review

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  30 Citations (Scopus)

  18 Downloads (Pure)

• Evaluation of multi-variate time series clustering for imputation of air pollution data

  Alahamade, W., Lake, I., Reeves, C. & De La Iglesia, B., 3 Nov 2021, In: Geoscientific Instrumentation, Methods and Data Systems. 10, p. 265–285 21 p.

  Research output: Contribution to journal › Article › peer-review

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• Human and environmental associates of local species-specific abundance in a multi-species deer assemblage

  Zini, V., Wäber, K., Hornigold, K., Lake, I. & Dolman, P. M., 22 Oct 2021, In: European Journal of Wildlife Research. 67, 6, 99.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  4 Citations (Scopus)

  11 Downloads (Pure)

• The COVID University Challenge: A hazard analysis of critical control points assessment of the return of students to higher education establishments

  Edmunds, K. L., Bowater, L., Brainard, J., de Coriolis, J-C., Lake, I., Malik, R. R., Newark, L., Ward, N., Yeoman, K. & Hunter, P. R., Dec 2021, In: Risk Analysis. 41, 12, p. 2286-2292 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  2 Citations (Scopus)

  21 Downloads (Pure)

• The lived experience of implementing infection control measures in care homes during two waves of the COVID-19 pandemic. A mixed-methods study

  Bunn, D., Brainard, J., Lane, K., Salter, C. & Lake, I., 3 Dec 2021, In: Journal of Long-Term Care. p. 386-400 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  9 Citations (Scopus)

  33 Downloads (Pure)

• The spatio-temporal distribution of COVID-19 infection in England between January and June 2020

  Elson, R., Davies, T. M., Lake, I. R., Vivancos, R., Blomquist, P. B., Charlett, A. & Dabrera, G., 8 Mar 2021, In: Epidemiology and Infection. 149, e73.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  23 Citations (Scopus)

  12 Downloads (Pure)
• 2020

  An Evolutionary Approach to Automatic Keyword Selection for Twitter Data Analysis

  Edo-Osagie, O., De La Iglesia, B., Lake, I. & Edeghere, O., 4 Nov 2020, Hybrid Artificial Intelligent Systems. de la Cal, E. A., Villar Flecha, J. R., Quintián, H. & Corchado, E. (eds.). Cham: Springer, p. 160-171 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12344 LNAI).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

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  2 Citations (Scopus)

  15 Downloads (Pure)

• Application of kernel smoothing to estimate the spatio-temporal variation in risk of STEC O157 in England

  Elson, R., Davies, T. M., Jenkins, C., Vivancos, R., O'Brien, S. J. & Lake, I. R., 1 Feb 2020, In: Spatial and Spatio-temporal Epidemiology. 32, 100305.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  5 Citations (Scopus)

  17 Downloads (Pure)

• A scoping review of the use of Twitter for public health research

  Edo-Osagie, O., De La Iglesia, B., Lake, I. & Edeghere, O., Jul 2020, In: Computers in Biology and Medicine. 122, 103770.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  92 Citations (Scopus)

  22 Downloads (Pure)

• Can syndromic surveillance help forecast winter hospital bed pressures in England?

  Morbey, R. A., Charlett, A., Lake, I., Mapstone, J., Pebody, R., Sedgwick, J., Smith, G. E. & Elliot, A. J., 10 Feb 2020, In: PLoS One. 15, 2, 11 p., e0228804.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  6 Citations (Scopus)

  19 Downloads (Pure)

• Clustering Imputation for Air Pollution Data

  Alahamade, W., Lake, I., Reeves, C. E. & De La Iglesia, B., 4 Nov 2020, Hybrid Artificial Intelligent Systems. de la Cal, E. A., Villar Flecha, J. R., Quintián, H. & Corchado, E. (eds.). Cham: Springer, p. 585-597 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12344 LNAI).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

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  3 Citations (Scopus)

  15 Downloads (Pure)

• Community use of facemasks and similar barriers to prevent respiratory illness such as COVID-19: A rapid scoping review

  Brainard, J., Jones, N. R., Lake, I. R., Hooper, L. & Hunter, P. R., 10 Dec 2020, In: Eurosurveillance. 25, 49, 2000725.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  43 Citations (Scopus)

  60 Downloads (Pure)

• Demographic and socioeconomic patterns in healthcare-seeking behaviour for respiratory symptoms in England: a comparison with non-respiratory symptoms and between three healthcare services

  Morrison, K. E., Colón-González, F. J., Morbey, R. A., Hunter, P. R., Rutter, J., Stuttard, G., de Lusignan, S., Yeates, A., Pebody, R., Smith, G., Elliot, A. J. & Lake, I. R., 6 Nov 2020, In: BMJ Open. 10, 11, e038356.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  10 Citations (Scopus)

  20 Downloads (Pure)

• Facemasks and similar barriers to prevent respiratory illness such as COVID-19: A rapid systematic review

  Brainard, JS., Jones, N., Lake, I., Hooper, L. & Hunter, P., 6 Apr 2020, medRxiv.

  Research output: Working paper › Preprint

  Open Access

• Impact of air pollution on educational attainment for respiratory health treated students: A cross sectional data linkage study

  Mizen, A., Lyons, J., Milojevic, A., Doherty, R., Wilkinson, P., Carruthers, D., Akbari, A., Lake, I., Davies, G. A., Al Sallakh, M., Fry, R., Dearden, L. & Rodgers, S., May 2020, In: Health & Place. 63, 20 p., 102355.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  7 Citations (Scopus)

  19 Downloads (Pure)

• Regional differences in presence of shiga toxin-producing Escherichia coli virulence-associated genes in the environment in the North West and East Anglian regions of England

  Kintz, E., Williams, N. J., Jones, N., van der Es, M., Lake, I. R., O'Brien, S. J. & Hunter, P. R., Aug 2020, In: Letters in Applied Microbiology. 71, 2, p. 179-186 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  2 Citations (Scopus)

  29 Downloads (Pure)

• Water, sanitation and hygiene risk factors for the transmission of cholera in a changing climate: using a systematic review to develop a causal process diagram

  Jones, N., Bouzid, M., Few, R., Hunter, P. & Lake, I., 1 Apr 2020, In: Journal of Water and Health. 18, 2, p. 145–158 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  19 Citations (Scopus)

  24 Downloads (Pure)
• 2019

  Attention-Based Recurrent Neural Networks (RNNs) for Short Text Classification: An Application in Public Health Monitoring

  Edo-Osagie, O., De La Iglesia, B., Lake, I. (ed.) & Edeghere, O. (ed.), 16 May 2019.

  Research output: Contribution to conference › Paper › peer-review

  Open Access

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  11 Citations (Scopus)

  18 Downloads (Pure)

• Climate, human behaviour or environment: individual-based modelling of Campylobacter seasonality and strategies to reduce disease burden

  Rushton, S., Sanderson, R., Diggle, P. J., Shirley, M., Blain, A., Lake, I., Maas, J., Reid, W., Hardstaff, J., Williams, N., Jones, N., Rigby, D., Strachan, N. J. C., Forbes, K., Hunter, P., Humphrey, T. J. & O'Brien, S., 21 Jan 2019, In: Journal of Translational Medicine. 17, 34.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  14 Citations (Scopus)

  43 Downloads (Pure)

• Climate change and epilepsy: Time to take action

  Sisodiya, S. M., Fowler, H. J., Lake, I., Nanji, R. O., Gawel, K., Esguerra, C. V., Newton, C. & Foley, A., Dec 2019, In: Epilepsia Open. 4, 4, p. 524-536 13 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

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  9 Citations (Scopus)

  11 Downloads (Pure)

• Comparison of statistical algorithms for daily syndromic surveillance aberration detection

  Noufaily, A., Morbey, R. A., Colón-González, F. J., Elliot, A. J., Smith, G. E., Lake, I. R. & McCarthy, N., 1 Sep 2019, In: Bioinformatics. 35, 17, p. 3110–3118 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  13 Citations (Scopus)

  23 Downloads (Pure)

• Deep Learning for Relevance Filtering in Syndromic Surveillance: A Case Study in Asthma/Difficulty Breathing

  Edo-Osagie, O., De La Iglesia, B., Lake, I. & Edeghere, O., 2019, p. 491-500. 10 p.

  Research output: Contribution to conference › Paper › peer-review

  Open Access

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  6 Citations (Scopus)

  24 Downloads (Pure)

• Exploring Campylobacter seasonality across Europe (2008-2016) using The European Surveillance System TESSy

  Lake, I., Colon Gonzalez, F. D. J., Takkinen, J., Rossi, M., Sudre, B., Gomez Dias, J., Tavoschi, L., Joshi, A., Semenza, J. & Nichols, G., 28 Mar 2019, In: Eurosurveillance. 24, 13, 1800028.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  32 Citations (Scopus)

  18 Downloads (Pure)

• Machine learning to refine decision making within a syndromic surveillance service

  Lake, I. R., Colon Gonzalez, F. D. J., Barker, G. C., Morbey, R. A., Smith, G. E. & Elliot, A. J., 14 May 2019, In: BMC Public Health. 19, 559.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  10 Citations (Scopus)

  18 Downloads (Pure)

• Ragweed pollen and allergic symptoms in children: Results from a three-year longitudinal study

  Jones, N. R., Agnew, M., Banic, I., Grossi, C. M., Colón-González, F. J., Plavec, D., Goodess, C. M., Epstein, M. M., Turkalj, M. & Lake, I. R., 1 Sep 2019, In: Science of the Total Environment. 683, p. 240-248 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  18 Citations (Scopus)

  16 Downloads (Pure)

• Seasonality and the effects of weather on Campylobacter infections

  Djennad, A., Lo Iacono, G., Sarran, C., Lane, C., Elson, R., Hoser, C., Lake, I. R., Colón-González, F. J., Kovats, S., Semenza, J. C., Bailey, T. C., Kessel, A., Fleming, L. E. & Nichols, G. L., 13 Mar 2019, In: BMC Infectious Diseases. 19, 255.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  37 Citations (Scopus)

  14 Downloads (Pure)

• Syndromic surveillance: two decades experience of sustainable systems – its people not just data!

  Smith, G. E., Elliot, A. J., Lake, I., Edeghere, O., Morbey, R. A., Catchpole, M., Heymann, D., Hawker, J., Ibbotson, S., McCloskey, B., Pebody, R. & Public Health England Real-time Syndromic Surveillance Team, Mar 2019, In: Epidemiology and Infection. 147, e101.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  23 Citations (Scopus)

  13 Downloads (Pure)

• The potential of recycled materials used in agriculture to contaminate food through uptake by livestock

  Fernandes, A., Lake, I., Dowding, A., Rose, M., Jones, N., Petch, R., Smith, F. & Panton, S., 1 Jun 2019, In: Science of the Total Environment. 667, p. 359-370 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  26 Citations (Scopus)

  40 Downloads (Pure)

• Twitter mining using semi-supervised classification for relevance filtering in syndromic surveillance

  Edo-Osagie, O., Smith, G., Lake, I., Edeghere, O. & De La Iglesia, B., 18 Jul 2019, In: PLoS One. 14, 7, e0210689.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  21 Citations (Scopus)

  29 Downloads (Pure)
• 2018

  A methodological framework for the evaluation of syndromic surveillance systems: A case study of England

  Colon-Gonzalez, F. J., Lake, I., Morbey, R. A., Elliot, A. J., Pebody, R. & Smith, G. E., 24 Apr 2018, In: BMC Public Health. 18, 544.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  14 Citations (Scopus)

  16 Downloads (Pure)

• A spatial and temporal analysis of risk factors associated with sporadic Shiga toxin-producing Escherichia coli O157 infection in England between 2009 and 2015

  Elson, R., Grace, K., Vivancos, R., Jenkins, C., Adak, G. K., O'Brien, S. J. & Lake, I., Nov 2018, In: Epidemiology and Infection. 146, 15, p. 1928-1939 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  14 Citations (Scopus)

  18 Downloads (Pure)

• Climate change, foodborne pathogens, and illness in higher income countries

  Lake, I. & Barker, G., Mar 2018, In: Current Environmental Health Reports. 5, 1, p. 187–196 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  49 Citations (Scopus)

  18 Downloads (Pure)

• Climate change and water-related infectious diseases

  Nichols, G., Lake, I. & Heaviside, C., 2 Oct 2018, In: Atmosphere. 9, 10, 60 p., 385.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

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  44 Citations (Scopus)

  65 Downloads (Pure)