John Wain

Search results

• 2024

  A decade of Campylobacter and Campylobacter bacteraemias in a district general hospital and the surrounding London and South East region, England

  Graham, A., Hawkins, L., Balasegaram, S., Narasimhan, S., Wain, J., Clarke, J. & Manuel, R., Jan 2024, In: Journal of Infection. 88, 1, p. 15-20 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  10 Downloads (Pure)

• A one health perspective on Salmonella enterica serovar Infantis, an emerging human multidrug-resistant pathogen

  Mattock, J., Chattaway, M. A., Hartman, H., Dallman, T. J., Smith, A. M., Keddy, K., Petrovska, L., Manners, E. J., Duze, S. T., Smouse, S., Tau, N., Timme, R., Baker, D. J., Mather, A. E., Wain, J. & Langridge, G. C., Apr 2024, In: Emerging Infectious Diseases. 30, 4, p. 701-710 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  4 Citations (Scopus)

  4 Downloads (Pure)

• Cancer invasion and anaerobic bacteria: New insights into mechanisms

  Hurst, R., Brewer, D. S., Gihawi, A., Wain, J. & Cooper, C. S., 28 Mar 2024, In: Journal of Medical Microbiology. 73, 3, 001817.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  File
  4 Downloads (Pure)

• Capturing clinically relevant Campylobacter attributes through direct whole genome sequencing of stool

  Djeghout, B., Le-Viet, T., Martins, L. D. O., Savva, G. M., Evans, R., Baker, D., Page, A., Elumogo, N., Wain, J. & Janecko, N., 30 Aug 2024, In: Microbial Genomics. 10, 8, 001284.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• High Campylobacter diversity in retail chicken: Epidemiologically important strains may be missed with current sampling methods

  Dziegiel, A. H., Bloomfield, S. J., Savva, G. M., Palau, R., Janecko, N., Wain, J. & Mather, A. E., 22 Aug 2024, In: Epidemiology and Infection. 152, 10 p., e101.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  5 Downloads (Pure)

• Sticking together: Independent evolution of biofilm formation in different species of staphylococci has occurred multiple times via different pathways

  Crossman, L., Sims, L., Dean, R., Felgate, H., Diaz Calvo, T., Hill, C., McNamara, I., Webber, M. A. & Wain, J., 28 Aug 2024, In: BMC Genomics. 25, 812.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2023

  A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia

  Cuypers, W. L., Meysman, P., Weill, F-X., Hendriksen, R. S., Beyene, G., Wain, J., Nair, S., Chattaway, M. A., Perez-Sepulveda, B. M., Ceyssens, P-J., de Block, T., Lee, W. W. Y., Pardos de la Gandara, M., Kornschober, C., Moran-Gilad, J., Veldman, K. T., Cormican, M., Torpdahl, M., Fields, P. I., Černý, T., & 9 othersHardy, L., Tack, B., Mellor, K. C., Thomson, N., Dougan, G., Deborggraeve, S., Jacobs, J., Laukens, K. & Van Puyvelde, S., 14 Jun 2023, In: Nature Communications. 14, 3517.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  5 Citations (Scopus)

  1 Downloads (Pure)

• Characterisation of neonatal Staphylococcus capitis NRCS-A isolates compared with non NRCS-A Staphylococcus capitis from neonates and adults

  Felgate, H., Sethi, D., Faust, K., Kiy, C., Härtel, C., Rupp, J., Clifford, R., Dean, R., Tremlett, C., Wain, J., Langridge, G., Clarke, P., Page, A. J. & Webber, M. A., 4 Oct 2023, In: Microbial Genomics. 9, 10, 001106.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  12 Downloads (Pure)

• Determination and quantification of microbial communities and antimicrobial resistance on food through host DNA-depleted metagenomics

  Bloomfield, S. J., Zomer, A. L., O'Grady, J., Kay, G. L., Wain, J., Janecko, N., Palau, R. & Mather, A. E., Apr 2023, In: Food Microbiology. 110, 104162.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  9 Citations (Scopus)

  19 Downloads (Pure)

• Genome-wide analysis of genes involved in efflux function and regulation within Escherichia coli and Salmonella enterica serovar Typhimurium

  Holden, E. R., Yasir, M., Turner, A. K., Wain, J., Charles, I. G. & Webber, M. A., 6 Feb 2023, In: Microbiology (United Kingdom). 169, 2, 001296.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  7 Citations (Scopus)
• 2022

  Comparative genomics of Campylobacter jejuni from clinical campylobacteriosis stool specimens

  Djeghout, B., Bloomfield, S. J., Rudder, S., Elumogo, N., Mather, A. E., Wain, J. & Janecko, N., 7 Dec 2022, In: Gut Pathogens. 14, 45.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  4 Citations (Scopus)

  4 Downloads (Pure)

• Genetic characterization of Salmonella Infantis from South Africa, 2004–2016

  Mattock, J., Smith, A. M., Keddy, K. H., Manners, E. J., Duze, S. T., Smouse, S., Tau, N., Baker, D., Chattaway, M. A., Mather, A. E., Wain, J. & Langridge, G. C., 5 Jul 2022, In: Access Microbiology. 4, 7, 000371.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  16 Downloads (Pure)

• Genome-scale metabolic modelling approach to understand the metabolism of the opportunistic human pathogen Staphylococcus epidermidis RP62A

  Díaz Calvo, T., Tejera, N., Mcnamara, I., Langridge, G. C., Wain, J., Poolman, M. & Singh, D., 2 Feb 2022, In: Metabolites. 12, 2, 136.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  8 Downloads (Pure)

• Impact of Salmonella genome rearrangement on gene expression

  Waters, E. V., Tucker, L. A., Ahmed, J. K., Wain, J. & Langridge, G. C., 1 Dec 2022, In: Evolution Letters. 6, 6, p. 426-437 12 p.

  Research output: Contribution to journal › Letter › peer-review

  Open Access

  File
  4 Citations (Scopus)

  4 Downloads (Pure)

• Microbiomes of urine and the prostate are linked to human prostate cancer risk groups

  Hurst, R., Meader, E., Gihawi, A., Rallapalli, G., Clark, J., Kay, G. L., Webb, M., Manley, K., Curley, H., Walker, H., Kumar, R., Schmidt, K., Crossman, L., Eeles, R. A., Wedge, D. C., Lynch, A. G., Massie, C. E., Yazbek-Hanna, M., Rochester, M., Mills, R. D., & 7 othersMithen, R. F., Traka, M. H., Ball, R. Y., O'Grady, J., Brewer, D. S., Wain, J. & Cooper, C. S., Aug 2022, In: European Urology Oncology. 5, 4, p. 412-419 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  14 Downloads (Pure)

• Quantitative bacterial counts in the bone marrow of Vietnamese patients with typhoid fever

  Van Be Bay, P., Wain, J., Phuong, L. T., Ho, V. A., Hien, T. T. & Parry, C. M., 1 Aug 2022, In: Transactions of the Royal Society of Tropical Medicine and Hygiene. 116, 8, p. 736-744 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  2 Citations (Scopus)

• Substrate utilisation and energy metabolism in non-growing Campylobacter jejuni M1cam

  Stoakes, E., Savva, G. M., Coates, R., Tejera, N., Poolman, M. G., Grant, A. J., Wain, J. & Singh, D., 5 Jul 2022, In: Microorganisms. 10, 7, 1355.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  5 Citations (Scopus)

• Use of Vitex doniana (black plum) and Abutilon hirtum (Florida keys) extracts as an integral part of phytomedicine in tackling multidrug-resistant Salmonella

  Noel, D., Wain, J. & Lar, P., 30 Aug 2022, In: Journal of Infection in Developing Countries. 16, 08, p. 1323-1328 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  1 Citation (Scopus)

  21 Downloads (Pure)
• 2021

  Bactericidal activities and post-antibiotic effects of ofloxacin and ceftriaxone against drug-resistant Salmonella enterica serovar Typhi

  Wain, J., Simpson, J. A., Thi Diem Nga, L., Song Diep, T., Thanh Duy, P., Baker, S., Day, N. P. J., White, N. J. & Parry, C. M., 1 Oct 2021, In: Journal of Antimicrobial Chemotherapy. 76, 10, p. 2606-2609 4 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  2 Citations (Scopus)

  2 Downloads (Pure)

• Characterization of a pESI-like plasmid and analysis of multidrug-resistant Salmonella enterica infantis isolates in England and Wales

  Lee, W. W. Y., Mattock, J., Greig, D. R., Langridge, G. C., Baker, D., Bloomfield, S., Mather, A. E., Wain, J. R., Edwards, A. M., Hartman, H., Dallman, T. J., Chattaway, M. A. & Nair, S., 14 Oct 2021, In: Microbial Genomics. 7, 10, 000658.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  23 Citations (Scopus)

  7 Downloads (Pure)

• CoronaHiT: High throughput sequencing of SARS-CoV-2 genomes

  Baker, D. J., Aydin, A., Le Viet, T., Kay, G. L., Rudder, S., de Oliveira Martins, L., Tedim, A. P., Kolyva, A., Diaz, M., Alikhan, N-F., Meadows, L., Bell, A., Gutierrez, A. V., Trotter, A. J., Thomson, N. M., Gilroy, R., Griffith, L., Adriaenssens, E. M., Stanley, R., Charles, I., & 9 othersFranslem-Elumogo, N., Wain, J., Prakash, R., Meader, E., Mather, A., Webber, M., Dervisevic, S., Page, A. J. & O'Grady, J., 9 Feb 2021, In: Genome Medicine. 13, 21.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  60 Citations (Scopus)

  29 Downloads (Pure)

• Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management

  Page, A. J., Mather, A. E., Le-Viet, T., Meader, E. J., Alikhan, N-F., Kay, G. L., De Oliveira Martins, L., Aydin, A., Baker, D. J., Trotter, A. J., Rudder, S., Tedim, A. P., Kolyva, A., Stanley, R., Yasir, M., Diaz, M., Potter, W., Stuart, C., Meadows, L., Bell, A., & 22 othersGutierrez, A. V., Thomson, N. M., Adriaenssens, E. M., Swingler, T., Gilroy, R. A. J., Griffith, L., Sethi, D. K., Aggarwal, D., Brown, C. S., Davidson, R. K., Kingsley, R. A., Bedford, L., Coupland, L. J., Charles, I. G., Elumogo, N., Wain, J., Prakash, R., Webber, M. A., Smith, S. J. L., Chand, M., Dervisevic, S. & O’Grady, J., 29 Jun 2021, In: Microbial Genomics. 7, 6, 000589.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  25 Citations (Scopus)

  17 Downloads (Pure)

• Massively parallel transposon mutagenesis identifies temporally essential genes for biofilm formation in Escherichia coli

  Holden, E. R., Yasir, M., Turner, A. K., Wain, J., Charles, I. G. & Webber, M. A., 16 Nov 2021, In: Microbial Genomics. 7, 11, 000673.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  11 Citations (Scopus)

  21 Downloads (Pure)

• Salmonella nomenclature in the genomic era: a time for change

  Chattaway, M. A., Langridge, G. C. & Wain, J., 5 Apr 2021, In: Scientific Reports. 11, 7494.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  33 Citations (Scopus)

  17 Downloads (Pure)
• 2020

  A whole-genome screen identifies Salmonella enterica serovar Typhi genes involved in fluoroquinolone susceptibility

  Turner, A. K., Eckert, S. E., Turner, D. J., Yasir, M., Webber, M. A., Charles, I. G., Parkhill, J. & Wain, J., Sep 2020, In: Journal of Antimicrobial Chemotherapy. 75, 9, p. 2516–2525 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  8 Citations (Scopus)

  13 Downloads (Pure)

• CoronaHiT: High throughput sequencing of SARS-CoV-2 genomes

  Baker, D. J., Kay, G. L., Aydin, A., Le-Viet, T., Rudder, S., Tedim, A. P., Kolyva, A., Diaz, M., de Oliveira Martins, L., Alikhan, N-F., Meadows, L., Bell, A., Gurierrez, A. V., Trotter, A. J., Thomson, N. M., Gilroy, R., Griffith, L., Adriaenssens, E. M., Stanley, R., Charles, I. G., & 9 othersElumogo, N., Wain, J., Prakash, R., Meader, E., Mather, A. E., Webber, M. A., Dervisevic, S., Page, A. J. & O'Grady, J., 24 Jun 2020, BioRxiv: BioMed Central.

  Research output: Working paper

  Open Access

  File
  29 Downloads (Pure)

• Emergence of resistance to fluoroquinolones and third-generation cephalosporins in Salmonella Typhi in Lahore, Pakistan

  Rasheed, F., Saeed, M., Alikhan, N-F., Baker, D., Khurshid, M., Ainsworth, E. V., Turner, A. K., Imran, A. A., Rasool, M. H., Saqalein, M., Nisar, M. A., Fayyaz Ur Rehman, M., Wain, J., Yasir, M., Langridge, G. C. & Ikram, A., 1 Sep 2020, In: Microorganisms. 8, 9, 1336.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  32 Citations (Scopus)

  12 Downloads (Pure)

• Genetic markers in s. Paratyphi c reveal primary adaptation to pigs

  Nair, S., Fookes, M., Corton, C., Thomson, N. R., Wain, J. & Langridge, G. C., 30 Apr 2020, In: Microorganisms. 8, 5, 10 p., 657.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  5 Citations (Scopus)

  9 Downloads (Pure)

• Genome-scale metabolic model driven design of a defined medium for Campylobacter jejuni M1cam

  Tejera, N., Crossman, L., Pearson, B., Stoakes, E., Nasher, F., Djeghout, B., Poolman, M., Wain, J. & Singh, D., 19 Jun 2020, In: Frontiers in Microbiology. 11, 1072.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  8 Citations (Scopus)

  139 Downloads (Pure)

• Identification and characterisation of enteroaggregative Escherichia coli subtypes associated with human disease

  Ellis, S. J., Crossman, L. C., McGrath, C. J., Chattaway, M. A., Hölken, J. M., Brett, B., Bundy, L., Kay, G. L., Wain, J. & Schüller, S., 4 May 2020, In: Scientific Reports. 10, 7475.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  23 Citations (Scopus)

  31 Downloads (Pure)

• Metagenomics and microscope revealed T. trichiura and other intestinal parasites in a cesspit of an Italian nineteenth century aristocratic palace

  Chessa, D., Murgia, M., Sias, E., Deligios, M., Mazzarello, V., Fiamma, M., Rovina, D., Carenti, G., Ganau, G., Pintore, E., Fiori, M., Kay, G. L., Ponzeletti, A., Cappuccinelli, P., Kelvin, D. J., Wain, J. & Rubino, S., 29 Jul 2020, In: Scientific Reports. 10, 12656.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  9 Citations (Scopus)

  11 Downloads (Pure)

• Preliminary evaluation of a rapid lateral flow calprotectin test for the diagnosis of prosthetic joint infection

  Trotter, A. J., Dean, R., Whitehouse, C. E., Mikalsen, J., Hill, C., Brunton-Sim, R., Kay, G. L., Shakokani, M., Durst, A. Z. E., Wain, J., Mcnamara, I. & O’Grady, J., 5 May 2020, In: Bone and Joint Research. 9, 5, p. 202-210 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  19 Citations (Scopus)

  29 Downloads (Pure)
• 2019

  Evaluation of multiplex tandem PCR (MT-PCR) assays for the detection of bacterial resistance genes among Enterobacteriaceae in clinical urines

  Schmidt, K., Stanley, K. K., Hale, R., Smith, L., Wain, J., O'Grady, J. & Livermore, D. M., 1 Feb 2019, In: Journal of Antimicrobial Chemotherapy. 74, 2, p. 349–356 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  12 Citations (Scopus)

  12 Downloads (Pure)

• Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection

  Charalampous, T., Kay, G., Richardson, H., Aydin, A., Baldan, R., Jeanes, C., Rae, D., Grundy, S., Turner, D. J., Wain, J., Leggett, R. M., Livermore, D. & O'Grady, J., 24 Jun 2019, In: Nature Biotechnology. 37, p. 783–792 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  374 Citations (Scopus)

  113 Downloads (Pure)

• Safety and efficacy of 2% chlorhexidine gluconate aqueous versus 2% chlorhexidine gluconate in 70% isopropyl alcohol for skin disinfection prior to percutaneous central venous catheter insertion in preterm neonates: The ARCTIC randomised-controlled feasibility trial protocol

  Clarke, P., Craig, J. V., Wain, J., Tremlett, C., Linsell, L., Bowler, U., Juszczak, E. & Heath, P. T., 1 Feb 2019, In: BMJ Open. 9, 2, e028022.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  11 Citations (Scopus)

  19 Downloads (Pure)
• 2018

  Ceftriaxone resistant Salmonella Typhi carries an IncI1-ST31 plasmid encoding CTXM-15

  Djeghout, B., Saha, S., Islam Sajib, M. S., Islam, M., Kay, G. L., Langridge, G. C., Wain, J. & Saha, S. K., 1 May 2018, In: Journal of Medical Microbiology. 67, 5, p. 620-627 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  21 Citations (Scopus)

  45 Downloads (Pure)

• Diagnosis of lower respiratory tract infections using nanopore sequencing

  Charalampous, T., Richardson, H., Kay, G., Baldan, R., Jeanes, C., Turner, D., Wain, J., Livermore, D., Leggett, R. & O'Grady, J., 2018, In: European Respiratory Journal. 52, Suppl., 2 p., PA5308.

  Research output: Contribution to journal › Abstract › peer-review
• 2017

  Clonality, virulence and antimicrobial resistance of enteroaggregative Escherichia coli from Bangladesh

  Chattaway, M. A., Day, M., Mtwale, J., White, E., Rogers, J., Day, M., Powell, D., Ahmad, M., Harris, R., Ali Talukder, K., Wain, J., Jenkins, C. & Cravioto, A., 25 Sep 2017, In: Journal of Medical Microbiology. 66, p. 1429-1435 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  14 Citations (Scopus)

  18 Downloads (Pure)

• Detection of mutations in gyrB using denaturing high performance liquid chromatography (DHPLC) among Salmonella enterica serovar Typhi and Paratyphi A

  Gupta, R., Gaind, R., Chandreshwor Singh, L., Paglietti, B., Deb, M., Rubino, S., Wain, J. & Farhat Basir, S., 7 Mar 2017, In: Transactions of the Royal Society of Tropical Medicine and Hygiene. 110, 12, p. 684-689 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  5 Citations (Scopus)

  26 Downloads (Pure)

• Development and evaluation of a multiple-locus variable-number tandem-repeats analysis assay for subtyping Salmonella Typhi strains from sub-Saharan Africa

  Tau, N. P., Smith, A. M., Wain, J. R., Tarupiwa, A., Coulibaly, K. J., Keddy, K. H. & GERMS-SA, 19 Jul 2017, In: Journal of Medical Microbiology. 66, 7, p. 937-945 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  9 Citations (Scopus)

  13 Downloads (Pure)

• Genomic Diversity in Salmonella enterica

  Wain, J. & O'Grady, J., 24 Jan 2017, Applied Genomics of Foodborne Pathogens. Deng, X., den Bakker, H. C. & Hendriksen, R. S. (eds.). Springer, p. 91-107 17 p. (Food Microbiology and Food Safety).

  Research output: Chapter in Book/Report/Conference proceeding › Other chapter contribution

• Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing

  Schmidt, K., Mwaigwisya, S., Crossman, L. C., Doumith, M., Munroe, D., Pires, C., Khan, A. M., Woodford, N., Saunders, N. J., Wain, J., O'Grady, J. & Livermore, D. M., 1 Jan 2017, In: Journal of Antimicrobial Chemotherapy. 72, 1, p. 104-114 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  73 Citations (Scopus)

  27 Downloads (Pure)

• Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants

  Alcon-Giner, C., Caim, S., Mitra, S., Ketskemety, J., Wegmann, U., Wain, J., Belteki, G., Clarke, P. & Hall, L. J., 2 Nov 2017, In: BMC Genomics. 18, 841.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  38 Citations (Scopus)

  15 Downloads (Pure)

• Salmonella

  Crump, J. A. & Wain, J., 2017, International Encyclopedia of Public Health. Quah, S. R. & Cockerham, W. C. (eds.). 2 ed. Elsevier, p. 425-433

  Research output: Chapter in Book/Report/Conference proceeding › Entry for encyclopedia/dictionary
  6 Citations (Scopus)
• 2016

  A novel broadly applicable PCR-RFLP method for rapid identification and subtyping of H58 Salmonella Typhi

  Murgia, M., Rubino, S., Wain, J., Gaind, R. & Paglietti, B., 1 Aug 2016, In: Journal of Microbiological Methods. 127, p. 219-223 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  14 Citations (Scopus)

  17 Downloads (Pure)

• Diversity of STs, plasmids and ESBL genes among Escherichia coli from humans, animals and food in Germany, the Netherlands and the UK

  Day, M. J., Rodríguez, I., Van Essen-zandbergen, A., Dierikx, C., Kadlec, K., Schink, A-K., Wu, G., Chattaway, M. A., Donascimento, V., Wain, J., Helmuth, R., Guerra, B., Schwarz, S., Threlfall, J., Woodward, M. J., Coldham, N., Mevius, D. & Woodford, N., May 2016, In: Journal of Antimicrobial Chemotherapy. 71, 5, p. 1178-1182 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  107 Citations (Scopus)

  10 Downloads (Pure)

• Microevolution during the emergence of a monophasic Salmonella Typhimurium epidemic in the United Kingdom

  Petrovska, L., Mather, A. E., AbuOun, M., Branchu, P., Harris, S. R., Connor, T., Hopkins, K. L., Underwood, A., Lettini, A. A., Page, A. J., Bagnall, M., Wain, J., Parkhill, J., Dougan, G., Davies, R. & Kingsley, R. A., Apr 2016, In: Emerging Infectious Diseases. 22, 4, p. 617-624 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  126 Citations (Scopus)

  13 Downloads (Pure)

• The population structure of Escherichia coli causing bacteraemia in the UK and Ireland between 2001 and 2010

  Day, M. J., Doumith, M., Abernethy, J., Hope, R., Reynolds, R., Wain, J., Livermore, D. M. & Woodford, N., Aug 2016, In: Journal of Antimicrobial Chemotherapy. 71, 8, p. 2139-2142 4 p.

  Research output: Contribution to journal › Article › peer-review
  36 Citations (Scopus)

• What’s in a name? Species-wide whole-genome sequencing resolves invasive and noninvasive lineages of Salmonella enterica Serotype Paratyphi B

  Connor, T. R., Owen, S. V., Langridge, G., Connell, S., Nair, S., Reuter, S., Dallman, T. J., Corander, J., Tabing, K. C., Le Hello, S., Fookes, M., Doublet, B., Zhou, Z., Feltwell, T., Ellington, M. J., Herrera, S., Gilmour, M., Cloeckaert, A., Achtman, M., Parkhill, J., & 5 othersWain, J., De Pinna, E., Weill, F-X., Peters, T. & Thomson, N., 23 Aug 2016, In: mBIO. 7, 4, e00527-16.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  25 Citations (Scopus)

  15 Downloads (Pure)
• 2015

  Applying phylogenomics to understand the emergence of Shiga Toxin producing Escherichia coli O157:H7 strains causing severe human disease in the United Kingdom

  Dallman, T. J., Ashton, P. M., Byrne, L., Perry, N. T., Petrovska, L., Ellis, R., Allison, L., Hanson, M., Holmes, A., Gunn, G. G., Chase-Topping, M. E., Woolhouse, M. E. J., Grant, K. A., Gally, D. L., Wain, J. & Jenkins, C., Sep 2015, In: Microbial Genomics. 1, 3

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  12 Downloads (Pure)