Rachael Stanley

Search results

• 2022

  Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

  Nickbakhsh, S., Hughes, J., Christofidis, N., Griffiths, E., Shaaban, S., Enright, J., Smollett, K., Nomikou, K., Palmalux, N., Tong, L., Carmichael, S., Sreenu, V. B., Orton, R., Goldstein, E. J., Tomb, R. M., The COVID-19 Genomics UK (COG-UK) Consortium, Templeton, K., Gunson, R. N., da Silva Filipe, A., Milosevic, C. & 5 others, Thomson, E., Robertson, D. L., Holden, M. T. G., Illingworth, C. J. R. & Smith-Palmer, A., 19 Jul 2022, In: Scientific Reports. 12, 11735.

  Research output: Contribution to journal › Article › peer-review

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  6 Citations (Scopus)

  5 Downloads (Pure)

• Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study

  Twohig, K. A., Nyberg, T., Zaidi, A., Thelwall, S., Sinnathamby, M. A., Aliabadi, S., Seaman, S. R., Harris, R. J., Hope, R., Lopez-Bernal, J., Gallagher, E., Charlett, A., De Angelis, D., Presanis, A. M., Dabrera, G. & COVID-19 Genomics UK (COG-UK) Consortium, Jan 2022, In: The Lancet Infectious Diseases. 22, 1, p. 35-42 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  525 Citations (Scopus)

• Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021

  Merhi, G., Trotter, A. J., de Olivera Martins, L., Koweyes, J., Le-Viet, T., Naja, H. A., Al Buaini, M., Prosolek, S. J., Alikhan, N-F., Lott, M., Tohmeh, T., Badran, B., Jupp, O., Gardner, S., Felgate, M., Makin, K., Wilkinson, J., Stanley, R., Sesay, A. K., Webber, M. & 6 others, Davidson, R., Ghosn, N., Pallen, M., Hasan, H., Page, A. J. & Tokajian, S., 25 Jul 2022, In: Microbial Genomics. 8, 7, 000838.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  7 Citations (Scopus)

  13 Downloads (Pure)

• SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

  Eales, O., Page, A. J., de Oliveira Martins, L., Wang, H., Bodinier, B., Haw, D., Jonnerby, J., Atchison, C., The COVID-19 Genomics UK (COG-UK) Consortium, Ashby, D., Barclay, W., Taylor, G., Cooke, G., Ward, H., Darzi, A., Riley, S., Chadeau-Hyam, M., Donnelly, C. A. & Elliott, P., 27 Jul 2022, In: BMC Infectious Diseases. 22, 647.

  Research output: Contribution to journal › Article › peer-review

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  10 Citations (Scopus)

  9 Downloads (Pure)

• SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

  Willett, B. J., Grove, J., MacLean, O. A., Wilkie, C., De Lorenzo, G., Furnon, W., Cantoni, D., Scott, S., Logan, N., Ashraf, S., Manali, M., Szemiel, A., Cowton, V., Vink, E., Harvey, W. T., Davis, C., Asamaphan, P., Smollett, K., Tong, L., Orton, R. & 22 others, Hughes, J., Holland, P., Silva, V., Pascall, D. J., Puxty, K., da Silva Filipe, A., Yebra, G., Shaaban, S., Holden, M. T. G., Pinto, R. M., Gunson, R., Templeton, K., Murcia, P. R., PITCH Consortium, The COVID-19 Genomics UK (COG-UK) Consortium, Patel, A. H., Klenerman, P., Dunachie, S., Robertson, D. L., Palmarini, M., Ray, S. & Thomson, E. C., Aug 2022, In: Nature Microbiology. 7, 8, p. 1161-1179 19 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  326 Citations (Scopus)

  21 Downloads (Pure)
• 2021

  A diffusion-like process accommodates new crypts during clonal expansion in human colonic epithelium

  Olpe, C., Khamis, D., Chukanova, M., Skoufou-Papoutsaki, N., Kemp, R., Marks, K., Tatton, C., Lindskog, C., Nicholson, A., Brunton-Sim, R., Malhotra, S., ten Hoopen, R., Stanley, R., Winton, D. J. & Morrissey, E., Aug 2021, In: Gastroenterology. 161, 2, p. 548-559.e23

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  6 Citations (Scopus)

  38 Downloads (Pure)

• Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England

  Volz, E., Mishra, S., Chand, M., Barrett, J. C., Johnson, R., Geidelberg, L., Hinsley, W. R., Laydon, D. J., Dabrera, G., O’Toole, Á., Amato, R., Ragonnet-Cronin, M., Harrison, I., Jackson, B., Ariani, C. V., Boyd, O., Loman, N. J., McCrone, J. T., Gonçalves, S., Jorgensen, D. & 15 others, Myers, R., Hill, V., Jackson, D. K., Gaythorpe, K., Groves, N., Sillitoe, J., Kwiatkowski, D. P., The COVID-19 Genomics UK (COG-UK) Consortium, Flaxman, S., Ratmann, O., Bhatt, S., Hopkins, S., Gandy, A., Rambaut, A. & Ferguson, N. M., 13 May 2021, In: Nature. 593, 7858, p. 266-269 4 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  738 Citations (Scopus)

  15 Downloads (Pure)

• CoronaHiT: High throughput sequencing of SARS-CoV-2 genomes

  Baker, D. J., Aydin, A., Le Viet, T., Kay, G. L., Rudder, S., de Oliveira Martins, L., Tedim, A. P., Kolyva, A., Diaz, M., Alikhan, N-F., Meadows, L., Bell, A., Gutierrez, A. V., Trotter, A. J., Thomson, N. M., Gilroy, R., Griffith, L., Adriaenssens, E. M., Stanley, R., Charles, I. & 9 others, Franslem-Elumogo, N., Wain, J., Prakash, R., Meader, E., Mather, A., Webber, M., Dervisevic, S., Page, A. J. & O'Grady, J., 9 Feb 2021, In: Genome Medicine. 13, 21.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  60 Citations (Scopus)

  28 Downloads (Pure)

• Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management

  Page, A. J., Mather, A. E., Le-Viet, T., Meader, E. J., Alikhan, N-F., Kay, G. L., De Oliveira Martins, L., Aydin, A., Baker, D. J., Trotter, A. J., Rudder, S., Tedim, A. P., Kolyva, A., Stanley, R., Yasir, M., Diaz, M., Potter, W., Stuart, C., Meadows, L., Bell, A. & 22 others, Gutierrez, A. V., Thomson, N. M., Adriaenssens, E. M., Swingler, T., Gilroy, R. A. J., Griffith, L., Sethi, D. K., Aggarwal, D., Brown, C. S., Davidson, R. K., Kingsley, R. A., Bedford, L., Coupland, L. J., Charles, I. G., Elumogo, N., Wain, J., Prakash, R., Webber, M. A., Smith, S. J. L., Chand, M., Dervisevic, S. & O’Grady, J., 29 Jun 2021, In: Microbial Genomics. 7, 6, 000589.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  24 Citations (Scopus)

  16 Downloads (Pure)

• SARS-CoV-2 evolution during treatment of chronic infection

  Kemp, S. A., Collier, D. A., Datir, R. P., Ferreira, I. A. T. M., Gayed, S., Jahun, A., Hosmillo, M., Rees-Spear, C., Mlcochova, P., Ushiro Lumb, I., Roberts, D. J., Chandra, A., Temperton, N., The CITIID-NIHR BioResource COVID-19 Collaboration, The COVID-19 Genomics UK (COG-UK) Consortium, Sharrocks, K., Blane, E., Modis, Y., Leigh, K. E., Briggs, J. A. G. & 17 others, van Gils, M. J., Smith, K. G. C., Bradley, J. R., Smith, C., Doffinger, R., Ceron-Gutierrez, L., Barcenas-Morales, G., Pollock, D. D., Goldstein, R. A., Smielewska, A., Skittrall, J. P., Gouliouris, T., Goodfellow, I. G., Gkrania-Klotsas, E., Illingworth, C. J. R., McCoy, L. E. & Gupta, R. K., 8 Apr 2021, In: Nature. 592, 7853, p. 277-282 6 p.

  Research output: Contribution to journal › Article › peer-review

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  646 Citations (Scopus)

  10 Downloads (Pure)

• Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

  Collier, D. A., De Marco, A., Ferreira, I. A. T. M., Meng, B., Datir, R. P., Walls, A. C., Kemp, S. A., Bassi, J., Pinto, D., Silacci-Fregni, C., Bianchi, S., Tortorici, M. A., Bowen, J., Culap, K., Jaconi, S., Cameroni, E., Snell, G., Pizzuto, M. S., Pellanda, A. F., Garzoni, C. & 21 others, Riva, A., The CITIID-NIHR BioResource COVID-19 Collaboration, Elmer, A., Kingston, N., Graves, B., McCoy, L. E., Smith, K. G. C., Bradley, J. R., Temperton, N., Ceron-Gutierrez, L., Barcenas-Morales, G., The COVID-19 Genomics UK (COG-UK) Consortium, Harvey, W., Virgin, H. T., Lanzavecchia, A., Piccoli, L., Doffinger, R., Wills, M., Veesler, D., Corti, D. & Gupta, R. K., 6 May 2021, In: Nature. 593, 7857, p. 136-141 6 p.

  Research output: Contribution to journal › Article › peer-review

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  507 Citations (Scopus)

  11 Downloads (Pure)

• The impact of viral mutations on recognition by SARS-CoV-2 specific T cells

  de Silva, T. I., Liu, G., Lindsey, B. B., Dong, D., Moore, S. C., Hsu, N. S., Shah, D., Wellington, D., Mentzer, A. J., Angyal, A., Brown, R., Parker, M. D., Ying, Z., Yao, X., Turtle, L., Dunachie, S., COVID-19 Genomics UK (COG-UK) Consortium, Maini, M. K., Ogg, G., Knight, J. C. & 4 others, ISARIC4C Investigators, Peng, Y., Rowland-Jones, S. L. & Dong, T., 19 Nov 2021, In: iScience. 24, 11, 103353.

  Research output: Contribution to journal › Article › peer-review

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  56 Citations (Scopus)

  9 Downloads (Pure)
• 2020

  A natural mutation in Pisum sativum L. (pea) alters starch assembly and improves glucose homeostasis in humans

  Petropoulou, K., Salt, L., Edwards, C., Warren, F., Garcia-Perez, I., Perez-Moral, N., Cross, K., Kellingray, L., Stanley, R., Koev, T., Khimyak, Y., Narbad, A., Penney, N., Serrano-Contreras, J. I., Chambers, E., Alshaalan, R., Khatib, M., Charalambides, M., Miguens Blanco, J., Castro Seoane, R. & 9 others, McDonald, J. A. K., Marchesi, J. R., Holmes, E., Godsland, I. F., Morrison, D. J., Preston, T., Domoney, C., Wilde, P. & Frost, G., Nov 2020, In: Nature Food. 1, 11, p. 693–704 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  40 Citations (Scopus)

  33 Downloads (Pure)

• CoronaHiT: High throughput sequencing of SARS-CoV-2 genomes

  Baker, D. J., Kay, G. L., Aydin, A., Le-Viet, T., Rudder, S., Tedim, A. P., Kolyva, A., Diaz, M., de Oliveira Martins, L., Alikhan, N-F., Meadows, L., Bell, A., Gurierrez, A. V., Trotter, A. J., Thomson, N. M., Gilroy, R., Griffith, L., Adriaenssens, E. M., Stanley, R., Charles, I. G. & 9 others, Elumogo, N., Wain, J., Prakash, R., Meader, E., Mather, A. E., Webber, M. A., Dervisevic, S., Page, A. J. & O'Grady, J., 24 Jun 2020, BioRxiv: BioMed Central.

  Research output: Working paper

  Open Access

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  26 Downloads (Pure)
• 2013

  Investigating tendon mineralisation in the avian hindlimb: a model for tendon ageing, injury and disease

  Agabalyan, N. A., Evans, D. J. R. & Stanley, R., Sep 2013, In: Journal of Anatomy. 223, 3, p. 262-277 16 p.

  Research output: Contribution to journal › Article › peer-review
  15 Citations (Scopus)
• 2010

  A duchenne muscular dystrophy gene hot spot mutation in dystrophin-deficient cavalier king charles spaniels is amenable to exon 51 skipping

  Walmsley, G. L., Arechavala-Gomeza, V., Fernandez-Fuente, M., Burke, M. M., Nagel, N., Holder, A., Stanley, R., Chandler, K., Marks, S. L., Muntoni, F., Shelton, G. D. & Piercy, R. J., 13 Jan 2010, In: PLoS One. 5, 1, e8647.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  101 Citations (Scopus)

• Developmental stages of the Japanese quail

  Ainsworth, S. J., Stanley, R. & Evans, D. J. R., Jan 2010, In: Journal of Anatomy. 216, 1, p. 3-15 13 p.

  Research output: Contribution to journal › Article › peer-review
  173 Citations (Scopus)
• 2009

  A glycogen synthase 1 mutation associated with equine polysaccharide storage myopathy and exertional rhabdomyolysis occurs in a variety of UK breeds

  Stanley, R. L., Mccue, M. E., Valberg, S. J., Mickelson, J. R., Mayhew, I. G., Mcgowan, C., Hahn, C. N., Patterson-Kane, J. C. & Piercy, R. J., 1 Jul 2009, In: Equine Veterinary Journal. 41, 6, p. 597-601 5 p.

  Research output: Contribution to journal › Article › peer-review
  48 Citations (Scopus)

• Immunohistochemical detection of NOD1 and NOD2 in the healthy murine and canine eye

  Scurrell, E., Stanley, R. & Schöniger, S., 6 Jul 2009, In: Veterinary Ophthalmology. 12, 4, p. 269-275 7 p.

  Research output: Contribution to journal › Article › peer-review
  17 Citations (Scopus)

• Storage-associated artefact in equine muscle biopsy samples

  Stanley, R., Maile, C. & Piercy, R. J., Jan 2009, In: Equine Veterinary Journal. 41, 1, p. 82-86 5 p.

  Research output: Contribution to journal › Article › peer-review
  9 Citations (Scopus)
• 2008

  B cell lymphoma causing splenomegaly in a Sundevall's jird (Meriones crassus subspecies perpallidus)

  Wenzlow, N., Stanley, R. & Patterson-Kane, J. C., Apr 2008, In: Veterinary Record. 5, 162, p. 455-456 2 p.

  Research output: Contribution to journal › Article › peer-review
  1 Citation (Scopus)

• Effects of exercise on tenocyte cellularity and tenocyte nuclear morphology in immature and mature equine digital tendons

  Stanley, R. L., Edwards, L. J., Goodship, A. E., Firth, E. C. & Patterson-Kane, J. C., Mar 2008, In: Equine Veterinary Journal. 40, 2, p. 141-146 6 p.

  Research output: Contribution to journal › Article › peer-review
  21 Citations (Scopus)
• 2007

  Gap junction protein expression and cellularity: comparison of immature and adult equine digital tendons

  Stanley, R., Fleck, R. A., Becker, D. L., Goodship, A. E., Ralphs, J. R. & Patterson-Kane, J. C., Sep 2007, In: Journal of Anatomy. 211, 3, p. 325-334 10 p.

  Research output: Contribution to journal › Article › peer-review
  60 Citations (Scopus)