Rachael Stanley

Search results

• 2023

  The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis

  Pascall, D. J., Vink, E., Blacow, R., Bulteel, N., Campbell, A., Campbell, R., Clifford, S., Davis, C., Filipe, A. D. S., Sakka, N. E., Fjodorova, L., Forrest, R., Goldstein, E., Gunson, R., Haughney, J., Holden, M. T. G., Honour, P., Hughes, J., James, E., Lewis, T., & 17 othersLycett, S., MacLean, O., McHugh, M., Mollett, G., Onishi, Y., Parcell, B., Ray, S., Robertson, D. L., Shabaan, S., Shepherd, J. G., Smollett, K., Templeton, K., Wastnedge, E., Wilkie, C., Williams, T., Thomson, E. C. & The COVID-19 Genomics UK (COG-UK) Consortium, 13 Apr 2023, In: PLoS One. 18, 4, e0284187.

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  6 Citations (Scopus)

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• 2022

  Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

  Nickbakhsh, S., Hughes, J., Christofidis, N., Griffiths, E., Shaaban, S., Enright, J., Smollett, K., Nomikou, K., Palmalux, N., Tong, L., Carmichael, S., Sreenu, V. B., Orton, R., Goldstein, E. J., Tomb, R. M., The COVID-19 Genomics UK (COG-UK) Consortium, Templeton, K., Gunson, R. N., da Silva Filipe, A., Milosevic, C., & 5 othersThomson, E., Robertson, D. L., Holden, M. T. G., Illingworth, C. J. R. & Smith-Palmer, A., 19 Jul 2022, In: Scientific Reports. 12, 11735.

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  6 Citations (Scopus)

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• Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study

  Twohig, K. A., Nyberg, T., Zaidi, A., Thelwall, S., Sinnathamby, M. A., Aliabadi, S., Seaman, S. R., Harris, R. J., Hope, R., Lopez-Bernal, J., Gallagher, E., Charlett, A., De Angelis, D., Presanis, A. M., Dabrera, G. & COVID-19 Genomics UK (COG-UK) Consortium, Jan 2022, In: The Lancet Infectious Diseases. 22, 1, p. 35-42 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  547 Citations (Scopus)

• Recurrent SARS-CoV-2 mutations in immunodeficient patients

  Wilkinson, S. A. J., Richter, A., Casey, A., Osman, H., Mirza, J. D., Stockton, J., Quick, J., Ratcliffe, L., Sparks, N., Cumley, N., Poplawski, R., Nicholls, S. N., Kele, B., The COVID-19 Genomics UK (COG-UK) Consortium, Peacock, T. P. & Loman, N. J., 2022, In: Virus Evolution. 8, 2, veac050.

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  50 Citations (Scopus)

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• Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021

  Merhi, G., Trotter, A. J., de Olivera Martins, L., Koweyes, J., Le-Viet, T., Naja, H. A., Al Buaini, M., Prosolek, S. J., Alikhan, N-F., Lott, M., Tohmeh, T., Badran, B., Jupp, O., Gardner, S., Felgate, M., Makin, K., Wilkinson, J., Stanley, R., Sesay, A. K., Webber, M., & 6 othersDavidson, R., Ghosn, N., Pallen, M., Hasan, H., Page, A. J. & Tokajian, S., 25 Jul 2022, In: Microbial Genomics. 8, 7, 000838.

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  9 Citations (Scopus)

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• SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

  Eales, O., Page, A. J., de Oliveira Martins, L., Wang, H., Bodinier, B., Haw, D., Jonnerby, J., Atchison, C., The COVID-19 Genomics UK (COG-UK) Consortium, Ashby, D., Barclay, W., Taylor, G., Cooke, G., Ward, H., Darzi, A., Riley, S., Chadeau-Hyam, M., Donnelly, C. A. & Elliott, P., 27 Jul 2022, In: BMC Infectious Diseases. 22, 647.

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  10 Citations (Scopus)

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• SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

  Willett, B. J., Grove, J., MacLean, O. A., Wilkie, C., De Lorenzo, G., Furnon, W., Cantoni, D., Scott, S., Logan, N., Ashraf, S., Manali, M., Szemiel, A., Cowton, V., Vink, E., Harvey, W. T., Davis, C., Asamaphan, P., Smollett, K., Tong, L., Orton, R., & 22 othersHughes, J., Holland, P., Silva, V., Pascall, D. J., Puxty, K., da Silva Filipe, A., Yebra, G., Shaaban, S., Holden, M. T. G., Pinto, R. M., Gunson, R., Templeton, K., Murcia, P. R., PITCH Consortium, The COVID-19 Genomics UK (COG-UK) Consortium, Patel, A. H., Klenerman, P., Dunachie, S., Robertson, D. L., Palmarini, M., Ray, S. & Thomson, E. C., Aug 2022, In: Nature Microbiology. 7, 8, p. 1161-1179 19 p.

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  326 Citations (Scopus)

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• SARS-CoV-2 testing in the community: Testing positive samples with the TaqMan SARS-CoV-2 mutation panel to find variants in real time

  Ashford, F., Best, A., Dunn, S. J., Ahmed, Z., Siddiqui, H., Melville, J., Wilkinson, S., Mirza, J., Cumley, N., Stockton, J., Ferguson, J., Wheatley, L., Ratcliffe, E., Casey, A., Plant, T., Quick, J., Richter, A., Loman, N., McNally, A. & The COVID-19 Genomics UK (COG-UK) Consortium, 20 Apr 2022, In: Journal of Clinical Microbiology. 60, 4, e02408-21.

  Research output: Contribution to journal › Article › peer-review
  8 Citations (Scopus)
• 2021

  A diffusion-like process accommodates new crypts during clonal expansion in human colonic epithelium

  Olpe, C., Khamis, D., Chukanova, M., Skoufou-Papoutsaki, N., Kemp, R., Marks, K., Tatton, C., Lindskog, C., Nicholson, A., Brunton-Sim, R., Malhotra, S., ten Hoopen, R., Stanley, R., Winton, D. J. & Morrissey, E., Aug 2021, In: Gastroenterology. 161, 2, p. 548-559.e23

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  6 Citations (Scopus)

  42 Downloads (Pure)

• Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England

  Volz, E., Mishra, S., Chand, M., Barrett, J. C., Johnson, R., Geidelberg, L., Hinsley, W. R., Laydon, D. J., Dabrera, G., O’Toole, Á., Amato, R., Ragonnet-Cronin, M., Harrison, I., Jackson, B., Ariani, C. V., Boyd, O., Loman, N. J., McCrone, J. T., Gonçalves, S., Jorgensen, D., & 15 othersMyers, R., Hill, V., Jackson, D. K., Gaythorpe, K., Groves, N., Sillitoe, J., Kwiatkowski, D. P., The COVID-19 Genomics UK (COG-UK) Consortium, Flaxman, S., Ratmann, O., Bhatt, S., Hopkins, S., Gandy, A., Rambaut, A. & Ferguson, N. M., 13 May 2021, In: Nature. 593, 7858, p. 266-269 4 p.

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  738 Citations (Scopus)

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• CoronaHiT: High throughput sequencing of SARS-CoV-2 genomes

  Baker, D. J., Aydin, A., Le Viet, T., Kay, G. L., Rudder, S., de Oliveira Martins, L., Tedim, A. P., Kolyva, A., Diaz, M., Alikhan, N-F., Meadows, L., Bell, A., Gutierrez, A. V., Trotter, A. J., Thomson, N. M., Gilroy, R., Griffith, L., Adriaenssens, E. M., Stanley, R., Charles, I., & 9 othersFranslem-Elumogo, N., Wain, J., Prakash, R., Meader, E., Mather, A., Webber, M., Dervisevic, S., Page, A. J. & O'Grady, J., 9 Feb 2021, In: Genome Medicine. 13, 21.

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  60 Citations (Scopus)

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• Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management

  Page, A. J., Mather, A. E., Le-Viet, T., Meader, E. J., Alikhan, N-F., Kay, G. L., De Oliveira Martins, L., Aydin, A., Baker, D. J., Trotter, A. J., Rudder, S., Tedim, A. P., Kolyva, A., Stanley, R., Yasir, M., Diaz, M., Potter, W., Stuart, C., Meadows, L., Bell, A., & 22 othersGutierrez, A. V., Thomson, N. M., Adriaenssens, E. M., Swingler, T., Gilroy, R. A. J., Griffith, L., Sethi, D. K., Aggarwal, D., Brown, C. S., Davidson, R. K., Kingsley, R. A., Bedford, L., Coupland, L. J., Charles, I. G., Elumogo, N., Wain, J., Prakash, R., Webber, M. A., Smith, S. J. L., Chand, M., Dervisevic, S. & O’Grady, J., 29 Jun 2021, In: Microbial Genomics. 7, 6, 000589.

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  25 Citations (Scopus)

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• SARS-CoV-2 evolution during treatment of chronic infection

  Kemp, S. A., Collier, D. A., Datir, R. P., Ferreira, I. A. T. M., Gayed, S., Jahun, A., Hosmillo, M., Rees-Spear, C., Mlcochova, P., Ushiro Lumb, I., Roberts, D. J., Chandra, A., Temperton, N., The CITIID-NIHR BioResource COVID-19 Collaboration, The COVID-19 Genomics UK (COG-UK) Consortium, Sharrocks, K., Blane, E., Modis, Y., Leigh, K. E., Briggs, J. A. G., & 17 othersvan Gils, M. J., Smith, K. G. C., Bradley, J. R., Smith, C., Doffinger, R., Ceron-Gutierrez, L., Barcenas-Morales, G., Pollock, D. D., Goldstein, R. A., Smielewska, A., Skittrall, J. P., Gouliouris, T., Goodfellow, I. G., Gkrania-Klotsas, E., Illingworth, C. J. R., McCoy, L. E. & Gupta, R. K., 8 Apr 2021, In: Nature. 592, 7853, p. 277-282 6 p.

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  646 Citations (Scopus)

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• Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

  Collier, D. A., De Marco, A., Ferreira, I. A. T. M., Meng, B., Datir, R. P., Walls, A. C., Kemp, S. A., Bassi, J., Pinto, D., Silacci-Fregni, C., Bianchi, S., Tortorici, M. A., Bowen, J., Culap, K., Jaconi, S., Cameroni, E., Snell, G., Pizzuto, M. S., Pellanda, A. F., Garzoni, C., & 21 othersRiva, A., The CITIID-NIHR BioResource COVID-19 Collaboration, Elmer, A., Kingston, N., Graves, B., McCoy, L. E., Smith, K. G. C., Bradley, J. R., Temperton, N., Ceron-Gutierrez, L., Barcenas-Morales, G., The COVID-19 Genomics UK (COG-UK) Consortium, Harvey, W., Virgin, H. T., Lanzavecchia, A., Piccoli, L., Doffinger, R., Wills, M., Veesler, D., Corti, D. & Gupta, R. K., 6 May 2021, In: Nature. 593, 7857, p. 136-141 6 p.

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  507 Citations (Scopus)

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• The impact of viral mutations on recognition by SARS-CoV-2 specific T cells

  de Silva, T. I., Liu, G., Lindsey, B. B., Dong, D., Moore, S. C., Hsu, N. S., Shah, D., Wellington, D., Mentzer, A. J., Angyal, A., Brown, R., Parker, M. D., Ying, Z., Yao, X., Turtle, L., Dunachie, S., COVID-19 Genomics UK (COG-UK) Consortium, Maini, M. K., Ogg, G., Knight, J. C., & 4 othersISARIC4C Investigators, Peng, Y., Rowland-Jones, S. L. & Dong, T., 19 Nov 2021, In: iScience. 24, 11, 103353.

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  56 Citations (Scopus)

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• 2020

  A natural mutation in Pisum sativum L. (pea) alters starch assembly and improves glucose homeostasis in humans

  Petropoulou, K., Salt, L., Edwards, C., Warren, F., Garcia-Perez, I., Perez-Moral, N., Cross, K., Kellingray, L., Stanley, R., Koev, T., Khimyak, Y., Narbad, A., Penney, N., Serrano-Contreras, J. I., Chambers, E., Alshaalan, R., Khatib, M., Charalambides, M., Miguens Blanco, J., Castro Seoane, R., & 9 othersMcDonald, J. A. K., Marchesi, J. R., Holmes, E., Godsland, I. F., Morrison, D. J., Preston, T., Domoney, C., Wilde, P. & Frost, G., Nov 2020, In: Nature Food. 1, 11, p. 693–704 12 p.

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  42 Citations (SciVal)

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• 2013

  Investigating tendon mineralisation in the avian hindlimb: a model for tendon ageing, injury and disease

  Agabalyan, N. A., Evans, D. J. R. & Stanley, R., Sept 2013, In: Journal of Anatomy. 223, 3, p. 262-277 16 p.

  Research output: Contribution to journal › Article › peer-review
  15 Citations (Scopus)
• 2010

  A duchenne muscular dystrophy gene hot spot mutation in dystrophin-deficient cavalier king charles spaniels is amenable to exon 51 skipping

  Walmsley, G. L., Arechavala-Gomeza, V., Fernandez-Fuente, M., Burke, M. M., Nagel, N., Holder, A., Stanley, R., Chandler, K., Marks, S. L., Muntoni, F., Shelton, G. D. & Piercy, R. J., 13 Jan 2010, In: PLoS One. 5, 1, e8647.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  106 Citations (SciVal)

• Developmental stages of the Japanese quail

  Ainsworth, S. J., Stanley, R. & Evans, D. J. R., Jan 2010, In: Journal of Anatomy. 216, 1, p. 3-15 13 p.

  Research output: Contribution to journal › Article › peer-review
  181 Citations (SciVal)
• 2009

  A glycogen synthase 1 mutation associated with equine polysaccharide storage myopathy and exertional rhabdomyolysis occurs in a variety of UK breeds

  Stanley, R. L., Mccue, M. E., Valberg, S. J., Mickelson, J. R., Mayhew, I. G., Mcgowan, C., Hahn, C. N., Patterson-Kane, J. C. & Piercy, R. J., 1 Jul 2009, In: Equine Veterinary Journal. 41, 6, p. 597-601 5 p.

  Research output: Contribution to journal › Article › peer-review
  50 Citations (SciVal)

• Immunohistochemical detection of NOD1 and NOD2 in the healthy murine and canine eye

  Scurrell, E., Stanley, R. & Schöniger, S., 6 Jul 2009, In: Veterinary Ophthalmology. 12, 4, p. 269-275 7 p.

  Research output: Contribution to journal › Article › peer-review
  17 Citations (Scopus)

• Storage-associated artefact in equine muscle biopsy samples

  Stanley, R., Maile, C. & Piercy, R. J., Jan 2009, In: Equine Veterinary Journal. 41, 1, p. 82-86 5 p.

  Research output: Contribution to journal › Article › peer-review
  9 Citations (Scopus)
• 2008

  B cell lymphoma causing splenomegaly in a Sundevall's jird (Meriones crassus subspecies perpallidus)

  Wenzlow, N., Stanley, R. & Patterson-Kane, J. C., Apr 2008, In: Veterinary Record. 5, 162, p. 455-456 2 p.

  Research output: Contribution to journal › Article › peer-review
  1 Citation (Scopus)

• Effects of exercise on tenocyte cellularity and tenocyte nuclear morphology in immature and mature equine digital tendons

  Stanley, R. L., Edwards, L. J., Goodship, A. E., Firth, E. C. & Patterson-Kane, J. C., Mar 2008, In: Equine Veterinary Journal. 40, 2, p. 141-146 6 p.

  Research output: Contribution to journal › Article › peer-review
  23 Citations (SciVal)
• 2007

  Gap junction protein expression and cellularity: Comparison of immature and adult equine digital tendons

  Stanley, R. L., Fleck, R. A., Becker, D. L., Goodship, A. E., Ralphs, J. R. & Patterson-Kane, J. C., Sept 2007, In: Journal of Anatomy. 211, 3, p. 325-334 10 p.

  Research output: Contribution to journal › Article › peer-review
  62 Citations (SciVal)