Robert Kingsley

Search results

• 2023

  A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses

  Elek, C. K. A., Brown, T. L., Viet, T. L., Evans, R., Baker, D. J., Telatin, A., Tiwari, S. K., Al-Khanaq, H., Thilliez, G., Kingsley, R. A., Hall, L. J., Webber, M. A. & Adriaenssens, E. M., 18 Jul 2023, In: Microbial Genomics. 9, 7, 001065.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  3 Citations (Scopus)

  8 Downloads (Pure)

• Population structure of Salmonella enterica Typhi in Harare, Zimbabwe (2012–19) before typhoid conjugate vaccine roll-out: A genomic epidemiology study

  Thilliez, G., Mashe, T., Chaibva, B. V., Robertson, V., Bawn, M., Tarupiwa, A., Takawira, F. T., Kock, M. M., Midzi, S., Mwamakamba, L. W., Matheu, J., Juru, A., Kingsley, R. A. & Ehlers, M. M., Dec 2023, In: The Lancet Microbe. 4, 12, p. e1005-e1014 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  7 Downloads (Pure)

• Strain and serovar variants of Salmonella enterica exhibit diverse tolerance to food chain-related stress

  Pye, H. V., Thilliez, G., Acton, L., Kolenda, R., Al-Khanaq, H., Grove, S. & Kingsley, R. A., Jun 2023, In: Food Microbiology. 112, 104237.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  8 Citations (Scopus)

  8 Downloads (Pure)
• 2022

  Computational prediction and experimental validation of Salmonella Typhimurium SopE-mediated fine-tuning of autophagy in intestinal epithelial cells

  Demeter, A., Jacomin, A-C., Gul, L., Lister, A., Lipscombe, J., Invernizzi, R., Branchu, P., Macaulay, I., Nezis, I. P., Kingsley, R. A., Korcsmaros, T. & Hautefort, I., 17 Aug 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 834895.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  3 Citations (Scopus)

  8 Downloads (Pure)

• Increased phage resistance through lysogenic conversion accompanying emergence of monophasic Salmonella Typhimurium ST34 pandemic strain

  Charity, O. J., Acton, L., Bawn, M., Tassinari, E., Thilliez, G., Chattaway, M. A., Dallman, T. J., Petrovska, L. & Kingsley, R. A., 16 Nov 2022, In: Microbial Genomics. 8, 11, 000897.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  1 Citation (Scopus)

  18 Downloads (Pure)

• Multilayered networks of SalmoNet2 enable strain comparisons of the Salmonella genus on a molecular level

  Métris, A., Baranyi, J., Kingsley, R. A., Korcsmaros, T., Olbei, M., Bohar, B., Fazekas, D., Madgwick, M., Sudhakar, P. & Hautefort, I., Aug 2022, In: mSystems. 7, 4, e01493-21.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  1 Citation (Scopus)

  13 Downloads (Pure)

• Single-cell genomics reveals population structures from in vitro evolutionary studies of Salmonella

  Bawn, M., Hernandez, J., Trampari, E., Thilliez, G., Quince, C., Webber, M. A., Kingsley, R. A., Hall, N. & Macaulay, I. C., 20 Sep 2022, In: Microbial Genomics. 8, 9, 000871.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  3 Citations (Scopus)

  8 Downloads (Pure)

• The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

  Africa Pathogen Genomics Initiative (Africa PGI), 7 Oct 2022, In: Science. 378, 6615, eabq5358.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  58 Citations (Scopus)

  29 Downloads (Pure)
• 2021

  A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa

  Wilkinson, E., Giovanetti, M., Tegally, H., San, J. E., Lessells, R., Cuadros, D., Martin, D. P., Rasmussen, D. A., Zekri, A. R. N., Sangare, A. K., Ouedraogo, A. S., Sesay, A. K., Priscilla, A., Kemi, A. S., Olubusuyi, A. M., Oluwapelumi, A. O. O., Hammami, A., Amuri, A. A., Sayed, A., Ouma, A. E. O. & 282 others, Elargoubi, A., Ajayi, N. A., Victoria, A. F., Kazeem, A., George, A., Trotter, A. J., Yahaya, A. A., Keita, A. K., Diallo, A., Kone, A., Souissi, A., Chtourou, A., Gutierrez, A. V., Page, A. J., Vinze, A., Iranzadeh, A., Lambisia, A., Ismail, A., Rosemary, A., Sylverken, A., Femi, A., Ibrahimi, A., Marycelin, B., Oderinde, B. S., Bolajoko, B., Dhaala, B., Herring, B. L., Njanpop-Lafourcade, B. M., Kleinhans, B., McInnis, B., Tegomoh, B., Brook, C., Pratt, C. B., Scheepers, C., Akoua-Koffi, C. G., Agoti, C. N., Peyrefitte, C., Daubenberger, C., Morang’a, C. M., Nokes, D. J., Amoako, D. G., Bugembe, D. L., Park, D., Baker, D., Doolabh, D., Ssemwanga, D., Tshiabuila, D., Bassirou, D., Amuzu, D. S. Y., Goedhals, D., Omuoyo, D. O., Maruapula, D., Foster-Nyarko, E., Lusamaki, E. K., Simulundu, E., Ong’era, E. M., Ngabana, E. N., Shumba, E., El Fahime, E., Lokilo, E., Mukantwari, E., Philomena, E., Belarbi, E., Simon-Loriere, E., Anoh, E. A., Leendertz, F., Ajili, F., Enoch, F. O., Wasfi, F., Abdelmoula, F., Mosha, F. S., Takawira, F. T., Derrar, F., Bouzid, F., Onikepe, F., Adeola, F., Muyembe, F. M., Tanser, F., Dratibi, F. A., Mbunsu, G. K., Thilliez, G., Kay, G. L., Githinji, G., van Zyl, G., Awandare, G. A., Schubert, G., Maphalala, G. P., Ranaivoson, H. C., Lemriss, H., Anise, H., Abe, H., Karray, H. H., Nansumba, H., Elgahzaly, H. A., Gumbo, H., Smeti, I., Ayed, I. B., Odia, I., Boubaker, I. B. B., Gaaloul, I., Gazy, I., Mudau, I., Ssewanyana, I., Konstantinus, I., Lekana-Douk, J. B., Makangara, J. C. C., Tamfum, J. J. M., Heraud, J. M., Shaffer, J. G., Giandhari, J., Li, J., Yasuda, J., Mends, J. Q., Kiconco, J., Morobe, J. M., Gyapong, J. O., Okolie, J. C., Kayiwa, J. T., Edwards, J. A., Gyamfi, J., Farah, J., Nakaseegu, J., Ngoi, J. M., Namulondo, J., Andeko, J. C., Lutwama, J. J., O’Grady, J., Siddle, K., Adeyemi, K. T., Tumedi, K. A., Said, K. M., Hae-Young, K., Duedu, K. O., Belyamani, L., Fki-Berrajah, L., Singh, L., Martins, L. D. O., Tyers, L., Ramuth, M., Mastouri, M., Aouni, M., el Hefnawi, M., Matsheka, M. I., Kebabonye, M., Diop, M., Turki, M., Paye, M., Nyaga, M. M., Mareka, M., Damaris, M. M., Mburu, M. W., Mpina, M., Nwando, M., Owusu, M., Wiley, M. R., Youtchou, M. T., Ayekaba, M. O., Abouelhoda, M., Seadawy, M. G., Khalifa, M. K., Sekhele, M., Ouadghiri, M., Diagne, M. M., Mwenda, M., Allam, M., Phan, M. V. T., Abid, N., Touil, N., Rujeni, N., Kharrat, N., Ismael, N., Dia, N., Mabunda, N., Hsiao, N. Y., Silochi, N. B., Nsenga, N., Gumede, N., Mulder, N., Ndodo, N., Razanajatovo, N. H., Iguosadolo, N., Judith, O., Kingsley, O. C., Sylvanus, O., Peter, O., Femi, O., Idowu, O., Testimony, O., Chukwuma, O. E., Ogah, O. E., Onwuamah, C. K., Cyril, O., Faye, O., Tomori, O., Ondoa, P., Combe, P., Semanda, P., Oluniyi, P. E., Arnaldo, P., Quashie, P. K., Dussart, P., Bester, P. A., Mbala, P. K., Ayivor-Djanie, R., Njouom, R., Phillips, R. O., Gorman, R., Kingsley, R. A., Carr, R. A. A., El Kabbaj, S., Gargouri, S., Masmoudi, S., Sankhe, S., Lawal, S. B., Kassim, S., Trabelsi, S., Metha, S., Kammoun, S., Lemriss, S., Agwa, S. H. A., Calvignac-Spencer, S., Schaffner, S. F., Doumbia, S., Mandanda, S. M., Aryeetey, S., Ahmed, S. S., Elhamoumi, S., Andriamandimby, S., Tope, S., Lekana-Douki, S., Prosolek, S., Ouangraoua, S., Mundeke, S. A., Rudder, S., Panji, S., Pillay, S., Engelbrecht, S., Nabadda, S., Behillil, S., Budiaki, S. L., van der Werf, S., Mashe, T., Aanniz, T., Mohale, T., Le-Viet, T., Schindler, T., Anyaneji, U. J., Chinedu, U., Ramphal, U., Jessica, U., George, U., Fonseca, V., Enouf, V., Gorova, V., Roshdy, W. H., Ampofo, W. K., Preiser, W., Choga, W. T., Bediako, Y., Naidoo, Y., Butera, Y., de Laurent, Z. R., Sall, A. A., Rebai, A., von Gottberg, A., Kouriba, B., Williamson, C., Bridges, D. J., Chikwe, I., Bhiman, J. N., Mine, M., Cotten, M., Moyo, S., Gaseitsiwe, S., Saasa, N., Sabeti, P. C., Kaleebu, P., Tebeje, Y. K., Tessema, S. K., Happi, C., Nkengasong, J. & de Oliveira, T., 22 Oct 2021, In: Science. 374, 6566, p. 423-431 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  115 Citations (Scopus)

  8 Downloads (Pure)

• Functional analysis of colonization factor antigen I positive enterotoxigenic Escherichia coli identifies genes implicated in survival in water and host colonization

  Ghany, M. A. E., Barquist, L., Clare, S., Brandt, C., Mayho, M., Joffré, E., Sjöling, Å., Turner, A. K., Klena, J. D., Kingsley, R. A., Hill-Cawthorne, G. A., Dougan, G. & Pickard, D., 10 Jun 2021, In: Microbial Genomics. 7, 6, 000554.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  4 Citations (Scopus)

  5 Downloads (Pure)

• Molecular epidemiology of extended-spectrum beta-lactamase–producing extra-intestinal pathogenic Escherichia coli strains over a 2-year period (2017–2019) from Zimbabwe

  Takawira, F. T., Pitout, J. D. D., Thilliez, G., Mashe, T., Gutierrez, A. V., Kingsley, R. A., Peirano, G., Matheu, J., Midzi, S. M., Mwamakamba, L. W., Gally, D. L., Tarupiwa, A., Mukavhi, L., Ehlers, M. M., Mtapuri-Zinyowera, S. & Kock, M. M., 15 Nov 2021, (E-pub ahead of print) In: European Journal of Clinical Microbiology and Infectious Diseases.

  Research output: Contribution to journal › Article › peer-review
  5 Citations (Scopus)
• 2020

  Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation

  Bawn, M., Alikhan, N-F., Thilliez, G., Kirkwood, M., Wheeler, N. E., Petrovska, L., Dallman, T. J., Adriaenssens, E. M., Hall, N. & Kingsley, R. A., 8 Jun 2020, In: PLoS Genetics. 16, 6, 29 p., e1008850.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  43 Citations (Scopus)

  15 Downloads (Pure)

• Mutation of hilD in a Salmonella Derby lineage linked to swine adaptation and reduced risk to human health

  Tambassi, M., Berni, M., Bracchi, C., Scaltriti, E., Morganti, M., Bolzoni, L., Tanner, J. R., Thilliez, G., Kingsley, R. A., Pongolini, S. & Casadei, G., 9 Dec 2020, In: Scientific Reports. 10, 21539.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  7 Citations (Scopus)

  15 Downloads (Pure)
• 2019

  Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580

  Canals, R., Hammarlöf, D. L., Kröger, C., Owen, S. V., Fong, W. Y., Lacharme-Lora, L., Zhu, X., Wenner, N., Carden, S. E., Honeycutt, J., Monack, D. M., Kingsley, R. A., Brownridge, P., Chaudhuri, R. R., Rowe, W. P. M., Predeus, A. V., Hokamp, K., Gordon, M. A. & Hinton, J. C. D., 15 Jan 2019, In: PLoS Biology. 17, 1, e3000059.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  49 Citations (Scopus)

  35 Downloads (Pure)

• Microevolution of antimicrobial resistance and biofilm formation of Salmonella Typhimurium during persistence on pig farms

  Tassinari, E., Duffy, G., Bawn, M., Burgess, C. M., McCabe, E. M., Lawlor, P. G., Gardiner, G. & Kingsley, R. A., 20 Jun 2019, In: Scientific Reports. 9, 8832.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  32 Citations (Scopus)

  17 Downloads (Pure)

• SGI-4 in monophasic Salmonella typhimurium ST34 is a novel ice that enhances resistance to copper

  Branchu, P., Charity, O. J., Bawn, M., Thilliez, G., Dallman, T. J., Petrovska, L. & Kingsley, R. A., 24 May 2019, In: Frontiers in Microbiology. 10, MAY, 1118.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  49 Citations (Scopus)

  18 Downloads (Pure)
• 2018

  Functional analysis of Salmonella Typhi adaptation to survival in water

  Kingsley, R. A., Langridge, G., Smith, S. E., Makendi, C., Fookes, M., Wileman, T. M., El Ghany, M. A., Keith Turner, A., Dyson, Z. A., Sridhar, S., Pickard, D., Kay, S., Feasey, N., Wong, V., Barquist, L. & Dougan, G., Nov 2018, In: Environmental Microbiology. 20, 11, p. 4079-4090 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  15 Citations (Scopus)

  14 Downloads (Pure)

• Genome variation and molecular epidemiology of Salmonella enterica serovar Typhimurium pathovariants

  Branchu, P., Bawn, M. & Kingsley, R. A., Aug 2018, In: Infection and Immunity. 86, 8, e00079-18.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  75 Citations (Scopus)

  23 Downloads (Pure)
• 2016

  Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host

  Klemm, E. J., Gkrania-Klotsas, E., Hadfield, J., Forbester, J. L., Harris, S. R., Hale, C., Heath, J. N., Wileman, T., Clare, S., Kane, L., Goulding, D., Otto, T. D., Kay, S., Doffinger, R., Cooke, F. J., Carmichael, A., Lever, A. M. L., Parkhill, J., MacLennan, C. A., Kumararatne, D. & 2 others, Dougan, G. & Kingsley, R. A., 25 Jan 2016, In: Nature Microbiology. 1, 3, 15023 .

  Research output: Contribution to journal › Article › peer-review
  71 Citations (Scopus)

• Microevolution during the emergence of a monophasic Salmonella Typhimurium epidemic in the United Kingdom

  Petrovska, L., Mather, A. E., AbuOun, M., Branchu, P., Harris, S. R., Connor, T., Hopkins, K. L., Underwood, A., Lettini, A. A., Page, A. J., Bagnall, M., Wain, J., Parkhill, J., Dougan, G., Davies, R. & Kingsley, R. A., Apr 2016, In: Emerging Infectious Diseases. 22, 4, p. 617-624 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  126 Citations (Scopus)

  12 Downloads (Pure)
• 2015

  Signatures of adaptation in human invasive Salmonella Typhimurium ST313 populations from sub-Saharan Africa

  Okoro, C. K., Barquist, L., Connor, T. R., Harris, S. R., Clare, S., Stevens, M. P., Arends, M. J., Hale, C., Kane, L., Pickard, D. J., Hill, J., Harcourt, K., Parkhill, J., Dougan, G. & Kingsley, R. A., 24 Mar 2015, In: PLoS Neglected Tropical Diseases. 9, 3, e0003611.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  94 Citations (Scopus)

  4 Downloads (Pure)