Vincent Moulton

Search results

• Connectivity calculus

  Cieslik, D., Dress, A., Huber, K. T. & Moulton, V., Apr 2003, In: Applied Mathematics Letters. 16, 3, p. 395-399 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Consensus networks: A method for visualising incompatibilities in collections of trees

  Holland, B. & Moulton, V., 2003, Algorithms in Bioinformatics. Benson, G. & Page, R. (eds.). Springer Berlin / Heidelberg, Vol. 2812. p. 165-176 12 p. (Lecture Notes in Computer Science).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  113 Citations (Scopus)

• Consistency of the Neighbor-Net algorithm

  Bryant, D., Moulton, V. & Spillner, A., 28 Jun 2007, In: Algorithms for Molecular Biology. 2, 8.

  Research output: Contribution to journal › Article

  Open Access
  32 Citations (Scopus)

• Consistency of the QNet algorithm for generating planar split graphs from weighted quartets

  Gruenewald, S., Moulton, V. & Spillner, A., 28 May 2009, In: Discrete Applied Mathematics. 157, 10, p. 2325-2334 10 p.

  Research output: Contribution to journal › Article › peer-review
  11 Citations (Scopus)

• Consistency of topological moves based on the balanced minimum evolution principle of phylogenetic inference

  Bordewich, M., Gascuel, O., Huber, K. T. & Moulton, V., 2009, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 6, 1, p. 110-117 8 p.

  Research output: Contribution to journal › Article › peer-review
  26 Citations (Scopus)

• Constructing and drawing regular planar split networks

  Spillner, A., Nguyen, B. & Moulton, V., 2012, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 9, 2, p. 395-407 13 p.

  Research output: Contribution to journal › Article › peer-review
  9 Citations (Scopus)

• Convergence of prognostic gene signatures suggests underlying mechanisms of human prostate cancer progression

  Luca, B., Moulton, V., Ellis, C., Connell, S. P., Brewer, D. & Cooper, C., 16 Jul 2020, In: Genes. 11, 7, 802.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  6 Citations (Scopus)

  63 Downloads (Pure)

• Counting vertices and cubes in median graphs associated to circular split systems

  Choe, Y., Koolen, J., Huber, K. T., Moulton, V. & Won, Y., 2008, In: European Journal of Combinatorics. 29, 2, p. 443-456 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  6 Citations (Scopus)

• Crinkled zonotopes

  Moulton, V. & Da Silva, I., 1998, Mathematics Dept, Mid Sweden University.

  Research output: Working paper

• Cut points in metric spaces

  Dress, A. W. M., Huber, K. T., Koolen, J. & Moulton, V., 2008, In: Applied Mathematics Letters. 21, 6, p. 545-548 4 p.

  Research output: Contribution to journal › Article › peer-review
  6 Citations (Scopus)

• Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms

  Duncan, A., Barry, K., Daum, C., Eloe-Fadrosh, E., Roux, S., Schmidt, K., Tringe, S. G., Valentin, K. U., Varghese, N., Salamov, A., Grigoriev, I. V., Leggett, R. M., Moulton, V. & Mock, T., Apr 2023, In: Data in Brief. 47, 108990.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  5 Downloads (Pure)

• Deciphering the diversity of small RNAs in plants: the long and short of it

  Schwach, F., Moxon, S., Moulton, V. & Dalmay, T., 2009, In: Briefings in Functional Genomics and Proteomics. 8, 6, p. 472-481 10 p.

  Research output: Contribution to journal › Article › peer-review
  27 Citations (Scopus)

• Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

  Moxon, S., Jing, R., Szittya, G., Schwach, F., Rusholme Pilcher, R. L., Moulton, V. & Dalmay, T., Oct 2008, In: Genome Research. 18, 10, p. 1602-1609 8 p.

  Research output: Contribution to journal › Article › peer-review
  415 Citations (Scopus)

• Degradome assisted plant MicroRNA prediction under alternative annotation criteria

  Alzahrani, S., Applegate, C., Swarbreck, D., Dalmay, T., Folkes, L. & Moulton, V., 1 Nov 2022, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 19, 6, p. 3374-3383 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  1 Citation (Scopus)

  30 Downloads (Pure)

• Delta- additive and Delta-ultra-additive maps, Gromov's trees and the Farris transform

  Dress, A., Holland, B., Huber, K. T., Koolen, J., Moulton, V. & Weyer-Menkoff, J., 15 Feb 2005, In: Discrete Applied Mathematics. 146, 1, p. 51-73 23 p.

  Research output: Contribution to journal › Article › peer-review
  19 Citations (Scopus)

• DESNT: a poor prognosis category of human prostate cancer

  Luca, B-A., Brewer, D. S., Edwards, D. R., Edward, S., Whitaker, H. C., Merson, S., Denis, N., Cooper, R. A., Hazell, S., Warren, A. Y., The CancerMap Group, Eeles, R., Lynch, A. G., Ross-Adams, H., Lamb, A. D., Neal, D. E., Sethia, K., Mills, R. D., Ball, R. Y., Curley, H., & 3 othersClark, J., Moulton, V. & Cooper, C. S., Dec 2018, In: European Urology Focus. 4, 6, p. 842-850 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  28 Citations (Scopus)

  60 Downloads (Pure)

• Dissimilarity maps and substitution models

  Moulton, V. L., Steel, M. A. & Tuffley, C., 1997, p. 111-131. 21 p.

  Research output: Contribution to conference › Paper

• Distinguishing between hot-spots and melting-pots of genetic diversity using haplotype connectivity

  Nguyen, B., Spillner, A., Emerson, B. C. & Moulton, V., 20 Mar 2010, In: Algorithms for Molecular Biology. 5, 10 p., 19.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  2 Citations (Scopus)

• Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions

  Lopez-Gomollon, S., Mohorianu, I., Szittya, G., Moulton, V. & Dalmay, T., Dec 2012, In: Planta. 236, 6, p. 1875-1887 13 p.

  Research output: Contribution to journal › Article › peer-review
  67 Citations (Scopus)

• Diversities and the generalized circumradius

  Bryant, D., Huber, K. T., Moulton, V. & Tupper, P. F., Dec 2023, In: Discrete and Computational Geometry. 70, 4, p. 1862–1883 22 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  7 Downloads (Pure)

• Embedding complexity and discrete optimization I: A new divide and conquer approach to discrete optimization

  Cieslik, D., Dress, A., Huber, K. T. & Moulton, V., Sep 2002, In: Annals of Combinatorics. 6, 3-4, p. 257-273 17 p.

  Research output: Contribution to journal › Article › peer-review

• Embedding complexity and discrete optimization II: A dynamical programming approach to the Steiner-Tree Problem

  Cieslik, D., Dress, A., Huber, K. T. & Moulton, V., 2002, In: Annals of Combinatorics. 6, 3-4, p. 275-283 9 p.

  Research output: Contribution to journal › Article › peer-review

• Encoding and constructing 1-nested phylogenetic networks with trinets

  Huber, K. T. & Moulton, V., 1 Jul 2013, In: Algorithmica. 66, 3, p. 714-738 25 p.

  Research output: Contribution to journal › Article › peer-review
  27 Citations (Scopus)

• Encoding and ordering X-cactuses

  Francis, A., Huber, K. T., Moulton, V. & Wu, T., Jan 2023, In: Advances in Applied Mathematics. 142, 102414.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  2 Citations (Scopus)

  8 Downloads (Pure)

• Encoding phylogenetic trees in terms of weighted quartets

  Grünewald, S., Huber, K. T., Moulton, V. & Semple, C., 2008, In: Journal of Mathematical Biology. 56, 4, p. 465-477 13 p.

  Research output: Contribution to journal › Article › peer-review
  12 Citations (Scopus)

• Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides

  Nicolas, F. E., Moxon, S., de Haro, J. P., Calo, S., Grigoriev, I. V., Torres-Martinez, S., Moulton, V., Ruiz-Vazquez, R. M. & Dalmay, T., 2010, In: Nucleic Acids Research. 38, 16, p. 5535-5541 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  92 Citations (Scopus)

• Estimating and approximating the total pi-electron energy of benzenoid hydrocarbons

  Gutman, I., Koolen, J. H., Moulton, V., Parac, M., Soldatović, T. & Vidović, D., 2000, In: Zeitschrift für Naturforschung A. 55a, 5, p. 507-512 6 p.

  Research output: Contribution to journal › Article › peer-review
  13 Citations (Scopus)

• Estimating parameters for generalized mass action models using constraint propagation

  Tucker, W., Kutalik, Z. & Moulton, V., 2007, In: Mathematical Biosciences. 208, 2, p. 607-620 14 p.

  Research output: Contribution to journal › Article › peer-review
  39 Citations (Scopus)

• Evolutionary genomics of a cold-adapted diatom: Fragilariopsis cylindrus

  Mock, T., Otillar, R. P., Strauss, J., McMullan, M., Paajanen, P., Schmutz, J., Salamov, A., Sanges, R., Toseland, A., Ward, B. J., Allen, A. E., Dupont, C. L., Frickenhaus, S., Maumus, F., Veluchamy, A., Wu, T., Barry, K. W., Falciatore, A., Ferrante, M. I., Fortunato, A. E., & 24 othersGlöckner, G., Gruber, A., Hipkin, R., Janech, M. G., Kroth, P. G., Leese, F., Lindquist, E. A., Lyon, B. R., Martin, J., Mayer, C., Parker, M., Quesneville, H., Raymond, J. A., Uhlig, C., Valas, R. E., Valentin, K. U., Worden, A. Z., Armbrust, E. V., Clark, M. D., Bowler, C., Green, B. R., Moulton, V., van Oosterhout, C. & Grigoriev, I. V., 26 Jan 2017, In: Nature. 541, p. 536–540 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  274 Citations (Scopus)

  17 Downloads (Pure)

• Evolutionary rate and genetic drift of hepatitis C virus are not correlated with the host immune response: Studies of infected donor-recipient clusters

  Allain, J-P., Dong, Y., Vandamme, A-M., Moulton, V. & Salemi, M., Mar 2000, In: Journal of Virology. 74, 6, p. 2541-2549 9 p.

  Research output: Contribution to journal › Article
  49 Citations (Scopus)

• Evolution through segmental duplications and losses: A super-reconciliation approach

  Delabre, M., El-Mabrouk, N., Huber, K., Lafond, M., Moulton, V., Noutahi, E. & Sautie Castellanos, M., 26 May 2020, In: Algorithms for Molecular Biology. 15, 1, 15 p., 12.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  14 Citations (Scopus)

  38 Downloads (Pure)

• Experimental identification of microRNA-140 targets by silencing and over-expressing miR-140

  Nicolas Molina, F. E., Pais, H., Schwach, F., Lindow, M., Kauppinen, S., Moulton, V. & Dalmay, T., Oct 2008, In: RNA. 14, p. 2513-2520 8 p.

  Research output: Contribution to journal › Article › peer-review
  104 Citations (Scopus)

• Exploration of germplasm resources: progress and results from the application of molecular markers to the whole JIC Pisum collection

  Ambrose, M. J., Knox, M., Vershinin, A., Flavell, A. J., Moulton, V. & Ellis, T. H. N., Jun 2004, p. 157-160. 4 p.

  Research output: Contribution to conference › Paper

• Exploring and visualising spaces of tree reconciliations

  Huber, K. T., Moulton, V., Sagot, M-F. & Sinaimeri, B., Jul 2019, In: Systematic Biology. 68, 4, p. 607-618 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  9 Citations (Scopus)

  15 Downloads (Pure)

• Exploring contradictory phylogenetic relationships in yeasts

  Wu, Q., James, S. A., Roberts, I. N., Moulton, V. & Huber, K. T., 2008, In: FEMS Yeast Research. 8, 4, p. 641-650 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  23 Citations (Scopus)

• Finding sRNA generative locales from high-throughput sequencing data with NiBLS

  MacLean, D., Moulton, V. & Studholme, D. J., 18 Feb 2010, In: BMC Bioinformatics. 11, 93.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  9 Citations (Scopus)

• FiRePat-finding regulatory patterns between sRNAs and genes

  Mohorianu, I., Lopez-Gomollon, S., Schwach, F., Dalmay, T. & Moulton, V., 2012, In: Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery. 2, 3, p. 273-284 12 p.

  Research output: Contribution to journal › Article › peer-review
  5 Citations (Scopus)

• Fishing for minimum evolution trees with Neighbor-Nets

  Bastkowski, S., Spillner, A. & Moulton, V., 1 Jan 2014, In: Information Processing Letters. 114, 1-2, p. 13-18 6 p.

  Research output: Contribution to journal › Article › peer-review

  File
  2 Citations (Scopus)

  9 Downloads (Pure)

• FlatNJ: A novel network-based approach to visualize evolutionary and biogeographical relationships

  Balvočiūtė, M., Spillner, A. & Moulton, V., 2014, In: Systematic Biology. 63, 3, p. 383-396 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  6 Citations (Scopus)

  18 Downloads (Pure)

• Folding and unfolding phylogenetic trees and networks

  Huber, K., Moulton, V., Steel, M. & Wu, T., Dec 2016, In: Journal of Mathematical Biology. 73, 6, p. 1761–1780 20 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  29 Citations (Scopus)

  10 Downloads (Pure)

• Forest-based networks

  Huber, K. T., Moulton, V. & Scholz, G. E., 15 Sep 2022, In: Bulletin of Mathematical Biology. 84, 119.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  1 Citation (Scopus)

  9 Downloads (Pure)

• Four characters suffice

  Huber, K. T., Moulton, V. & Steel, M., Jun 2003, p. 133-139. 7 p.

  Research output: Contribution to conference › Paper

• Four characters suffice to convexly define a phylogenetic tree

  Huber, K. T., Moulton, V. & Steel, M., 2005, In: SIAM Journal on Discrete Mathematics. 18, 4, p. 835-843 9 p.

  Research output: Contribution to journal › Article › peer-review
  14 Citations (Scopus)

• From event-labeled gene trees to species trees

  Hernandez-Rosales, M., Hellmuth, M., Wieseke, N., Huber, K. T., Moulton, V. & Stadler, PF., 2012.

  Research output: Contribution to conference › Other

  36 Citations (SciVal)

• Generating functions for multi-labeled trees

  Czabarka, E., Erdős, P. L., Johnson, V. & Moulton, V., 1 Jan 2013, In: Discrete Applied Mathematics. 161, 1-2, p. 107-117 11 p.

  Research output: Contribution to journal › Article › peer-review
  9 Citations (Scopus)

• Genetic and structural diversity of prokaryotic ice-binding proteins from the central Arctic Ocean

  Winder, J. C., Boulton, W., Salamov, A., Eggers, S. L., Metfies, K., Moulton, V. & Mock, T., 30 Jan 2023, In: Genes. 14, 2, 363.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  6 Citations (Scopus)

  41 Downloads (Pure)

• Geometric medians in reconciliation spaces of phylogenetic trees

  Huber, K. T., Moulton, V., Sagot, M-F. & Sinaimeri, B., Aug 2018, In: Information Processing Letters. 136, p. 96-101 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  12 Citations (Scopus)

  14 Downloads (Pure)

• Global discovery and characterization of small non-coding RNAs in marine microalgae

  Lopez-Gomollon, S., Beckers, M., Rathjen, T., Moxon, S., Maumus, F., Mohorianu, I., Moulton, V., Dalmay, T. & Mock, T., 20 Aug 2014, In: BMC Genomics. 15, 1, 697.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  18 Citations (Scopus)

  16 Downloads (Pure)

• Hereditarily optimal realizations of consistent metrics

  Dress, A., Huber, K. T., Lesser, A. & Moulton, V., 2006, In: Annals of Combinatorics. 10, 1, p. 63-67 5 p.

  Research output: Contribution to journal › Article › peer-review
  11 Citations (Scopus)

• Hierarchies from lowest stable ancestors in nonbinary phylogenetic networks

  Huber, K., Moulton, V. & Wu, T., Jul 2019, In: Journal of Classification. 36, 2, p. 200-231 32 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  2 Citations (Scopus)

  19 Downloads (Pure)