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• Degradome assisted plant MicroRNA prediction under alternative annotation criteria

  Alzahrani, S., Applegate, C., Swarbreck, D., Dalmay, T., Folkes, L. & Moulton, V., 1 Nov 2022, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 19, 6, p. 3374-3383 10 p.

  Research output: Contribution to journal › Article › peer-review

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  1 Citation (Scopus)

  36 Downloads (Pure)

• NATpare: a pipeline for high-throughput prediction and functional analysis of nat-siRNAs

  Thody, J., Folkes, L. & Moulton, V., 9 Jul 2020, In: Nucleic Acids Research. 48, 12, p. 6481–6490 10 p.

  Research output: Contribution to journal › Article › peer-review

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  9 Citations (Scopus)

  18 Downloads (Pure)

• PAREsnip2: A tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules

  Thody, J., Folkes, L., Medina-Calzada, Z., Xu, P., Dalmay, T. & Moulton, V., 28 Sep 2018, In: Nucleic Acids Research. 46, 17, p. 8730–8739 10 p.

  Research output: Contribution to journal › Article › peer-review

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  30 Citations (Scopus)

  52 Downloads (Pure)

• The role of the half-turn in determining structures of Alzheimer’s Aβ wild-type and mutants

  Hayward, S. & Kitao, A., Dec 2021, In: Journal of Structural Biology. 213, 4, 107792.

  Research output: Contribution to journal › Article › peer-review

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  1 Citation (Scopus)

  11 Downloads (Pure)

• Interacting with the biomolecular solvent accessible surface via a haptic feedback device

  Stocks, M. B., Hayward, S. & Laycock, S. D., 27 Oct 2009, In: BMC Structural Biology. 9, 69.

  Research output: Contribution to journal › Article › peer-review

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  22 Citations (Scopus)

  22 Downloads (Pure)

• miRCat2: Accurate prediction of plant and animal microRNAs from next-generation sequencing datasets

  Paicu, C., Mohorianu, I-I., Stocks, M., Xu, P., Coince, A., Billmeier, M., Dalmay, T., Moulton, V. & Moxon, S., 15 Aug 2017, In: Bioinformatics. 33, 16, p. 2446–2454 9 p.

  Research output: Contribution to journal › Article › peer-review

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  35 Citations (Scopus)

  62 Downloads (Pure)

• There are only finitely many distance-regular graphs of fixed valency greater than two

  Bang, S., Dubickas, A., Koolen, J. & Moulton, V., 10 Jan 2015, In: Advances in Mathematics. 269, p. 1-55 55 p.

  Research output: Contribution to journal › Article › peer-review

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  22 Citations (Scopus)

  17 Downloads (Pure)

• Investigation of sequence features of hinge-bending regions in proteins with domain movements using kernel logistic regression

  Veevers, R., Cawley, G. & Hayward, S., 9 Apr 2020, In: BMC Bioinformatics. 21, 137.

  Research output: Contribution to journal › Article › peer-review

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  2 Citations (Scopus)

  30 Downloads (Pure)

• Kernel learning at the first level of inference

  Cawley, G. C. & Talbot, N. L. C., 1 May 2014, In: Neural Networks. 53, p. 69-80 12 p.

  Research output: Contribution to journal › Article › peer-review

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  2 Citations (Scopus)

  17 Downloads (Pure)

• Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench

  Beckers, M., Mohorianu, I-I., Stocks, M., Applegate, C., Dalmay, T. & Moulton, V., Jun 2017, In: RNA. 23, 6, p. 823-835 13 p.

  Research output: Contribution to journal › Article › peer-review

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  22 Citations (Scopus)

  31 Downloads (Pure)

• Reconstructing (super)trees from data sets with missing distances: Not all is lost

  Kettleborough, G., Dicks, J. L., Roberts, I. N. & Huber, K. T., 2015, In: Molecular Biology and Evolution. 32, 6, p. 1628-1642 15 p.

  Research output: Contribution to journal › Article › peer-review

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  8 Citations (Scopus)

  10 Downloads (Pure)

• Geometrical principles of homomeric β-barrels and β-helices: Application to modeling amyloid protofilaments

  Hayward, S. & Milner-White, E. J., Oct 2017, In: Proteins: Structure, Function, and Bioinformatics. 85, 10, p. 1866–1881 16 p.

  Research output: Contribution to journal › Article › peer-review

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  4 Citations (Scopus)

  15 Downloads (Pure)

• Microbial-derived metabolites as a risk factor of age-related cognitive decline and dementia

  Connell, E., Le Gall, G., Pontifex, M. G., Sami, S., Cryan, J. F., Clarke, G., Müller, M. & Vauzour, D., 17 Jun 2022, In: Molecular Neurodegeneration. 17, 1, 43.

  Research output: Contribution to journal › Review article › peer-review

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  65 Citations (Scopus)

  20 Downloads (Pure)

• Current knowledge and recent advances in understanding metabolism of the model cyanobacterium Synechocystis sp. PCC 6803

  Mills, L., McCormick, A. J. & Lea-Smith, D., Apr 2020, In: Bioscience Reports. 40, 4, BSR20193325.

  Research output: Contribution to journal › Review article › peer-review

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  55 Citations (Scopus)

  57 Downloads (Pure)

• Gene-based mapping of trehalose biosynthetic pathway genes reveals association with source- and sink-related yield traits in a spring wheat panel

  Lyra, D. H., Griffiths, C. A., Watson, A., Joynson, R., Molero, G., Igna, A-A., Hassani-Pak, K., Reynolds, M. P., Hall, A. & Paul, M. J., Aug 2021, In: Food and Energy Security. 10, 3, e292.

  Research output: Contribution to journal › Article › peer-review

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  12 Citations (Scopus)

  2 Downloads (Pure)

• Electron transfer process in microbial electrochemical technologies: the role of cell-surface exposed conductive proteins

  Costa, N. L., Clarke, T. A., Philipp, L-A., Gescher, J., Louro, R. O. & Paquete, C. M., May 2018, In: Bioresource Technology. 255, p. 308-317

  Research output: Contribution to journal › Article › peer-review

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  78 Citations (Scopus)

  18 Downloads (Pure)

• Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

  Feasey, N. A., Hadfield, J., Keddy, K. H., Dallman, T. J., Jacobs, J., Deng, X., Wigley, P., Barquist, L., Langridge, G. C., Feltwell, T., Harris, S. R., Mather, A. E., Fookes, M., Aslett, M., Msefula, C., Kariuki, S., MacLennan, C. A., Onsare, R. S., Weill, F-X., Le Hello, S., & 27 othersSmith, A. M., McClelland, M., Desai, P., Parry, C. M., Cheesbrough, J., French, N., Campos, J., Chabalgoity, J. A., Betancor, L., Hopkins, K. L., Nair, S., Humphrey, T. J., Lunguya, O., Cogan, T. A., Tapia, M. D., Sow, S. O., Tennant, S. M., Bornstein, K., Levine, M. M., Lacharme-Lora, L., Everett, D. B., Kingsley, R. A., Parkhill, J., Heyderman, R. S., Dougan, G., Gordon, M. A. & Thomson, N. R., 1 Oct 2016, In: Nature Genetics. 48, 10, p. 1211-1217 7 p.

  Research output: Contribution to journal › Article › peer-review

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  142 Citations (Scopus)

  12 Downloads (Pure)

• Thirty years of resistance: Zig-zag through the plant immune system

  Ngou, B. P. M., Ding, P. & Jones, J. D. G., May 2022, In: The Plant Cell. 34, 5, p. 1447–1478 32 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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  330 Citations (Scopus)

  53 Downloads (Pure)

• Kitchen Chemistry: History and development

  Ashworth, S., 9 May 2018, In: Chemistry in Action!. 111, p. 29-35 6 p.

  Research output: Contribution to journal › Article

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