Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

M. Tofazzal Islam; Daniel Croll; Pierre Gladieux; Darren M. Soanes; Antoine Persoons; Pallab Bhattacharjee; Md. Shaid Hossain; Dipali Rani Gupta; Md. Mahbubur Rahman; M. Golam Mahboob; Nicola Cook; Moin U. Salam; Musrat Zahan Surovy; Vanessa Bueno Sancho; João Leodato Nunes Maciel; Antonio Nhanijúnior; Vanina Lilián Castroagudín; Juliana T. de Assis Reges; Paulo Cezar Ceresini; Sebastien Ravel; Ronny Kellner; Elisabeth Fournier; Didier Tharreau; Marc-Henri Lebrun; Bruce A. McDonald; Timothy Stitt; Daniel Swan; Nicholas J. Talbot; Diane G. O. Saunders; Joe Win; Sophien Kamoun

doi:10.1186/s12915-016-0309-7

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

M. Tofazzal Islam, Daniel Croll, Pierre Gladieux, Darren M. Soanes, Antoine Persoons, Pallab Bhattacharjee, Md. Shaid Hossain, Dipali Rani Gupta, Md. Mahbubur Rahman, M. Golam Mahboob, Nicola Cook, Moin U. Salam, Musrat Zahan Surovy, Vanessa Bueno Sancho, João Leodato Nunes Maciel, Antonio Nhanijúnior, Vanina Lilián Castroagudín, Juliana T. de Assis Reges, Paulo Cezar Ceresini, Sebastien RavelRonny Kellner, Elisabeth Fournier, Didier Tharreau, Marc-Henri Lebrun, Bruce A. McDonald, Timothy Stitt, Daniel Swan, Nicholas J. Talbot, Diane G. O. Saunders, Joe Win, Sophien Kamoun

Research output: Contribution to journal › Article › peer-review

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Abstract

Background: In February 2016, a new fungal disease was spotted in wheat fields across eight districts in Bangladesh. The epidemic spread to an estimated 15,000 hectares, about 16 % of the cultivated wheat area in Bangladesh, with yield losses reaching up to 100 %. Within weeks of the onset of the epidemic, we performed transcriptome sequencing of symptomatic leaf samples collected directly from Bangladeshi fields.

Results: Reinoculation of seedlings with strains isolated from infected wheat grains showed wheat blast symptoms on leaves of wheat but not rice. Our phylogenomic and population genomic analyses revealed that the wheat blast outbreak in Bangladesh was most likely caused by a wheat-infecting South American lineage of the blast fungus Magnaporthe oryzae.

Conclusion: Our findings suggest that genomic surveillance can be rapidly applied to monitor plant disease outbreaks and provide valuable information regarding the identity and origin of the infectious agent.

Original language	English
Article number	84
Journal	BMC Biology
Volume	14
DOIs	https://doi.org/10.1186/s12915-016-0309-7
Publication status	Published - 3 Oct 2016

Keywords

Field pathogenomics
Wheat blast
Phylogenomic analysis
Eleusine indica
Oryza sativa

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10.1186/s12915-016-0309-7Licence: CC BY

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© 2016 Islam et al. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
Final published version, 2.97 MBLicence: CC BY

http://bmcbiol.biomedcentral.com/articles/10.1186/s12915-016-0309-7Licence: CC BY

Sophien Kamoun
- S.Kamounuea.acuk
- School of Biological Sciences - Professor of Biology
- Plant Sciences - Member
Person: Research Group Member, Academic, Teaching & Research
Joe Win
- J.Winuea.acuk
- The Sainsbury Laboratory - Research Associate (TSL)
Person: Research & Analogous

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Islam, M. T., Croll, D., Gladieux, P., Soanes, D. M., Persoons, A., Bhattacharjee, P., Hossain, M. S., Gupta, D. R., Rahman, M. M., Mahboob, M. G., Cook, N., Salam, M. U., Surovy, M. Z., Sancho, V. B., Maciel, J. L. N., Nhanijúnior, A., Castroagudín, V. L., de Assis Reges, J. T., Ceresini, P. C., ... Kamoun, S. (2016). Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. BMC Biology, 14, [84]. https://doi.org/10.1186/s12915-016-0309-7

Islam, M. Tofazzal ; Croll, Daniel ; Gladieux, Pierre ; Soanes, Darren M. ; Persoons, Antoine ; Bhattacharjee, Pallab ; Hossain, Md. Shaid ; Gupta, Dipali Rani ; Rahman, Md. Mahbubur ; Mahboob, M. Golam ; Cook, Nicola ; Salam, Moin U. ; Surovy, Musrat Zahan ; Sancho, Vanessa Bueno ; Maciel, João Leodato Nunes ; Nhanijúnior, Antonio ; Castroagudín, Vanina Lilián ; de Assis Reges, Juliana T. ; Ceresini, Paulo Cezar ; Ravel, Sebastien ; Kellner, Ronny ; Fournier, Elisabeth ; Tharreau, Didier ; Lebrun, Marc-Henri ; McDonald, Bruce A. ; Stitt, Timothy ; Swan, Daniel ; Talbot, Nicholas J. ; Saunders, Diane G. O. ; Win, Joe ; Kamoun, Sophien. / Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. In: BMC Biology. 2016 ; Vol. 14.

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title = "Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae",

abstract = "Background: In February 2016, a new fungal disease was spotted in wheat fields across eight districts in Bangladesh. The epidemic spread to an estimated 15,000 hectares, about 16 % of the cultivated wheat area in Bangladesh, with yield losses reaching up to 100 %. Within weeks of the onset of the epidemic, we performed transcriptome sequencing of symptomatic leaf samples collected directly from Bangladeshi fields. Results: Reinoculation of seedlings with strains isolated from infected wheat grains showed wheat blast symptoms on leaves of wheat but not rice. Our phylogenomic and population genomic analyses revealed that the wheat blast outbreak in Bangladesh was most likely caused by a wheat-infecting South American lineage of the blast fungus Magnaporthe oryzae. Conclusion: Our findings suggest that genomic surveillance can be rapidly applied to monitor plant disease outbreaks and provide valuable information regarding the identity and origin of the infectious agent.",

keywords = "Field pathogenomics, Wheat blast, Phylogenomic analysis, Eleusine indica, Oryza sativa",

author = "Islam, {M. Tofazzal} and Daniel Croll and Pierre Gladieux and Soanes, {Darren M.} and Antoine Persoons and Pallab Bhattacharjee and Hossain, {Md. Shaid} and Gupta, {Dipali Rani} and Rahman, {Md. Mahbubur} and Mahboob, {M. Golam} and Nicola Cook and Salam, {Moin U.} and Surovy, {Musrat Zahan} and Sancho, {Vanessa Bueno} and Maciel, {Jo{\~a}o Leodato Nunes} and Antonio Nhanij{\'u}nior and Castroagud{\'i}n, {Vanina Lili{\'a}n} and {de Assis Reges}, {Juliana T.} and Ceresini, {Paulo Cezar} and Sebastien Ravel and Ronny Kellner and Elisabeth Fournier and Didier Tharreau and Marc-Henri Lebrun and McDonald, {Bruce A.} and Timothy Stitt and Daniel Swan and Talbot, {Nicholas J.} and Saunders, {Diane G. O.} and Joe Win and Sophien Kamoun",

note = " {\textcopyright} 2016 Islam et al. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.",

year = "2016",

month = oct,

day = "3",

doi = "10.1186/s12915-016-0309-7",

language = "English",

volume = "14",

journal = "BMC Biology",

issn = "1741-7007",

publisher = "BioMed Central",

}

Islam, MT, Croll, D, Gladieux, P, Soanes, DM, Persoons, A, Bhattacharjee, P, Hossain, MS, Gupta, DR, Rahman, MM, Mahboob, MG, Cook, N, Salam, MU, Surovy, MZ, Sancho, VB, Maciel, JLN, Nhanijúnior, A, Castroagudín, VL, de Assis Reges, JT, Ceresini, PC, Ravel, S, Kellner, R, Fournier, E, Tharreau, D, Lebrun, M-H, McDonald, BA, Stitt, T, Swan, D, Talbot, NJ, Saunders, DGO , Win, J & Kamoun, S 2016, 'Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae', BMC Biology, vol. 14, 84. https://doi.org/10.1186/s12915-016-0309-7

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. / Islam, M. Tofazzal; Croll, Daniel; Gladieux, Pierre; Soanes, Darren M.; Persoons, Antoine; Bhattacharjee, Pallab; Hossain, Md. Shaid; Gupta, Dipali Rani; Rahman, Md. Mahbubur; Mahboob, M. Golam; Cook, Nicola; Salam, Moin U.; Surovy, Musrat Zahan; Sancho, Vanessa Bueno; Maciel, João Leodato Nunes; Nhanijúnior, Antonio; Castroagudín, Vanina Lilián; de Assis Reges, Juliana T.; Ceresini, Paulo Cezar; Ravel, Sebastien; Kellner, Ronny; Fournier, Elisabeth; Tharreau, Didier; Lebrun, Marc-Henri; McDonald, Bruce A.; Stitt, Timothy; Swan, Daniel; Talbot, Nicholas J.; Saunders, Diane G. O.; Win, Joe ; Kamoun, Sophien.

In: BMC Biology, Vol. 14, 84, 03.10.2016.

Research output: Contribution to journal › Article › peer-review

TY - JOUR

T1 - Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

AU - Islam, M. Tofazzal

AU - Croll, Daniel

AU - Gladieux, Pierre

AU - Soanes, Darren M.

AU - Persoons, Antoine

AU - Bhattacharjee, Pallab

AU - Hossain, Md. Shaid

AU - Gupta, Dipali Rani

AU - Rahman, Md. Mahbubur

AU - Mahboob, M. Golam

AU - Cook, Nicola

AU - Salam, Moin U.

AU - Surovy, Musrat Zahan

AU - Sancho, Vanessa Bueno

AU - Maciel, João Leodato Nunes

AU - Nhanijúnior, Antonio

AU - Castroagudín, Vanina Lilián

AU - de Assis Reges, Juliana T.

AU - Ceresini, Paulo Cezar

AU - Ravel, Sebastien

AU - Kellner, Ronny

AU - Fournier, Elisabeth

AU - Tharreau, Didier

AU - Lebrun, Marc-Henri

AU - McDonald, Bruce A.

AU - Stitt, Timothy

AU - Swan, Daniel

AU - Talbot, Nicholas J.

AU - Saunders, Diane G. O.

AU - Win, Joe

AU - Kamoun, Sophien

N1 - © 2016 Islam et al. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

PY - 2016/10/3

Y1 - 2016/10/3

N2 - Background: In February 2016, a new fungal disease was spotted in wheat fields across eight districts in Bangladesh. The epidemic spread to an estimated 15,000 hectares, about 16 % of the cultivated wheat area in Bangladesh, with yield losses reaching up to 100 %. Within weeks of the onset of the epidemic, we performed transcriptome sequencing of symptomatic leaf samples collected directly from Bangladeshi fields. Results: Reinoculation of seedlings with strains isolated from infected wheat grains showed wheat blast symptoms on leaves of wheat but not rice. Our phylogenomic and population genomic analyses revealed that the wheat blast outbreak in Bangladesh was most likely caused by a wheat-infecting South American lineage of the blast fungus Magnaporthe oryzae. Conclusion: Our findings suggest that genomic surveillance can be rapidly applied to monitor plant disease outbreaks and provide valuable information regarding the identity and origin of the infectious agent.

AB - Background: In February 2016, a new fungal disease was spotted in wheat fields across eight districts in Bangladesh. The epidemic spread to an estimated 15,000 hectares, about 16 % of the cultivated wheat area in Bangladesh, with yield losses reaching up to 100 %. Within weeks of the onset of the epidemic, we performed transcriptome sequencing of symptomatic leaf samples collected directly from Bangladeshi fields. Results: Reinoculation of seedlings with strains isolated from infected wheat grains showed wheat blast symptoms on leaves of wheat but not rice. Our phylogenomic and population genomic analyses revealed that the wheat blast outbreak in Bangladesh was most likely caused by a wheat-infecting South American lineage of the blast fungus Magnaporthe oryzae. Conclusion: Our findings suggest that genomic surveillance can be rapidly applied to monitor plant disease outbreaks and provide valuable information regarding the identity and origin of the infectious agent.

KW - Field pathogenomics

KW - Wheat blast

KW - Phylogenomic analysis

KW - Eleusine indica

KW - Oryza sativa

U2 - 10.1186/s12915-016-0309-7

DO - 10.1186/s12915-016-0309-7

M3 - Article

VL - 14

JO - BMC Biology

JF - BMC Biology

SN - 1741-7007

M1 - 84

ER -

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

Abstract

Keywords

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Sophien Kamoun

Joe Win

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