Gene Discovery for Synthetic Biology: Exploring the Novel Natural Product Biosynthetic Capacity of Eukaryotic Microalgae

E. C. O'Neill, G. Saalbach, R. A. Field

Research output: Chapter in Book/Report/Conference proceedingChapter

11 Citations (Scopus)

Abstract

Eukaryotic microalgae are an incredibly diverse group of organisms whose sole unifying feature is their ability to photosynthesize. They are known for producing a range of potent toxins, which can build up during harmful algal blooms causing damage to ecosystems and fisheries. Genome sequencing is lagging behind in these organisms because of their genetic complexity, but transcriptome sequencing is beginning to make up for this deficit. As more sequence data becomes available, it is apparent that eukaryotic microalgae possess a range of complex natural product biosynthesis capabilities. Some of the genes concerned are responsible for the biosynthesis of known toxins, but there are many more for which we do not know the products. Bioinformatic and analytical techniques have been developed for natural product discovery in bacteria and these approaches can be used to extract information about the products synthesized by algae. Recent analyses suggest that eukaryotic microalgae produce many complex natural products that remain to be discovered.

Original languageEnglish
Title of host publicationMethods in Enzymology
EditorsSarah E. O'Connor
PublisherAcademic Press Inc.
Pages99-120
Number of pages22
DOIs
Publication statusPublished - 2016

Publication series

NameMethods in Enzymology
Volume576
ISSN (Print)0076-6879
ISSN (Electronic)1557-7988

Keywords

  • Euglena
  • Genome mining
  • Harmful algal blooms
  • Nonribosomal peptide
  • Polyketide
  • Transcriptome

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