Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Erik Alm; Eeva K. Broberg; Thomas Connor; Emma B. Hodcroft; Andrey B. Komissarov; Sebastian Maurer-Stroh; Angeliki Melidou; Richard A. Neher; Áine O’Toole; Dmitriy Pereyaslov; The WHO European Region sequencing laboratories and GISAID EpiCoV group

doi:10.2807/1560-7917.ES.2020.25.32.2001410

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Erik Alm, Eeva K. Broberg, Thomas Connor, Emma B. Hodcroft, Andrey B. Komissarov, Sebastian Maurer-Stroh, Angeliki Melidou, Richard A. Neher, Áine O’Toole, Dmitriy Pereyaslov, The WHO European Region sequencing laboratories and GISAID EpiCoV group

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Abstract

We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

Original language	English
Article number	2001410
Journal	Eurosurveillance
Volume	25
Issue number	32
DOIs	https://doi.org/10.2807/1560-7917.ES.2020.25.32.2001410
Publication status	Published - 13 Aug 2020

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Alm, E., Broberg, E. K., Connor, T., Hodcroft, E. B., Komissarov, A. B., Maurer-Stroh, S., Melidou, A., Neher, R. A., O’Toole, Á., Pereyaslov, D., & The WHO European Region sequencing laboratories and GISAID EpiCoV group (2020). Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. Eurosurveillance, 25(32), [2001410]. https://doi.org/10.2807/1560-7917.ES.2020.25.32.2001410

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title = "Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020",

abstract = "We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.",

author = "Erik Alm and Broberg, {Eeva K.} and Thomas Connor and Hodcroft, {Emma B.} and Komissarov, {Andrey B.} and Sebastian Maurer-Stroh and Angeliki Melidou and Neher, {Richard A.} and {\'A}ine O{\textquoteright}Toole and Dmitriy Pereyaslov and {The WHO European Region sequencing laboratories and GISAID EpiCoV group} and Rosemary Davidson",

year = "2020",

month = aug,

day = "13",

doi = "10.2807/1560-7917.ES.2020.25.32.2001410",

language = "English",

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Alm, E, Broberg, EK, Connor, T, Hodcroft, EB, Komissarov, AB, Maurer-Stroh, S, Melidou, A, Neher, RA, O’Toole, Á, Pereyaslov, D & The WHO European Region sequencing laboratories and GISAID EpiCoV group 2020, 'Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020', Eurosurveillance, vol. 25, no. 32, 2001410. https://doi.org/10.2807/1560-7917.ES.2020.25.32.2001410

TY - JOUR

T1 - Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

AU - Alm, Erik

AU - Broberg, Eeva K.

AU - Connor, Thomas

AU - Hodcroft, Emma B.

AU - Komissarov, Andrey B.

AU - Maurer-Stroh, Sebastian

AU - Melidou, Angeliki

AU - Neher, Richard A.

AU - O’Toole, Áine

AU - Pereyaslov, Dmitriy

AU - The WHO European Region sequencing laboratories and GISAID EpiCoV group

AU - Davidson, Rosemary

PY - 2020/8/13

Y1 - 2020/8/13

N2 - We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

AB - We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

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U2 - 10.2807/1560-7917.ES.2020.25.32.2001410

DO - 10.2807/1560-7917.ES.2020.25.32.2001410

M3 - Article

VL - 25

JO - Eurosurveillance

JF - Eurosurveillance

SN - 1560-7917

IS - 32

M1 - 2001410

ER -

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Abstract

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