Abstract
Trees with labelled leaves and with all other vertices of degree three play an important role in systematic biology and other areas of classification. A classical combinatorial result ensures that such trees can be uniquely reconstructed from the distances between the leaves (when the edges are given any strictly positive lengths). Moreover, a linear number of these pairwise distance values suffices to determine both the tree and its edge lengths. A natural set of pairs of leaves is provided by any `triplet cover' of the tree (based on the fact that each non-leaf vertex is the median vertex of three leaves). In this paper we describe a number of new results concerning triplet covers of minimum size. In particular, we characterize such covers in terms of an associated graph being a 2-tree. Also, we show that minimum triplet covers are `shellable' and thereby provide a set of pairs for which the inter-leaf distance values will uniquely determine the underlying tree and its associated branch lengths.
Original language | English |
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Pages (from-to) | 1827–1840 |
Number of pages | 14 |
Journal | Journal of Mathematical Biology |
Volume | 75 |
Issue number | 6-7 |
Early online date | 12 Jun 2017 |
DOIs | |
Publication status | Published - Dec 2017 |
Keywords
- trees
- median vertex
- 2-trees
- shellability
- reconstruction
Profiles
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Katharina Huber
- School of Computing Sciences - Associate Professor
- Computational Biology - Member
Person: Research Group Member, Academic, Teaching & Research
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Vincent Moulton
- School of Computing Sciences - Professor in Computational Biology
- Norwich Epidemiology Centre - Member
- Computational Biology - Member
Person: Research Group Member, Academic, Teaching & Research