Pfam: clans, web tools and services

Robert D Finn; Jaina Mistry; Benjamin Schuster-Böckler; Sam Griffiths-Jones; Volker Hollich; Timo Lassmann; Simon Moxon; Mhairi Marshall; Ajay Khanna; Richard Durbin; Sean R Eddy; Erik L L Sonnhammer; Alex Bateman

doi:10.1093/nar/gkj149

Pfam: clans, web tools and services

Robert D Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R Eddy, Erik L L Sonnhammer, Alex Bateman

School of Biological Sciences

Research output: Contribution to journal › Article › peer-review

1931 Citations (SciVal)

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Abstract

Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are described in detail, together with the new associated web pages. Improvements to the range of Pfam web tools and the first set of Pfam web services that allow programmatic access to the database and associated tools are also presented. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://pfam.cgb.ki.se/).

Original language	English
Pages (from-to)	D247-D251
Number of pages	5
Journal	Nucleic Acids Research
Volume	34
Issue number	Suppl 1
DOIs	https://doi.org/10.1093/nar/gkj149
Publication status	Published - 2006

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10.1093/nar/gkj149

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© The Author 2006. Published by Oxford University Press. All rights reserved The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact [email protected]
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Cite this

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title = "Pfam: clans, web tools and services",

abstract = "Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are described in detail, together with the new associated web pages. Improvements to the range of Pfam web tools and the first set of Pfam web services that allow programmatic access to the database and associated tools are also presented. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://pfam.cgb.ki.se/).",

author = "Finn, {Robert D} and Jaina Mistry and Benjamin Schuster-B{\"o}ckler and Sam Griffiths-Jones and Volker Hollich and Timo Lassmann and Simon Moxon and Mhairi Marshall and Ajay Khanna and Richard Durbin and Eddy, {Sean R} and Sonnhammer, {Erik L L} and Alex Bateman",

note = "{\textcopyright} The Author 2006. Published by Oxford University Press. All rights reserved The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact [email protected]",

year = "2006",

doi = "10.1093/nar/gkj149",

language = "English",

volume = "34",

pages = "D247--D251",

journal = "Nucleic Acids Research",

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T1 - Pfam: clans, web tools and services

AU - Finn, Robert D

AU - Mistry, Jaina

AU - Schuster-Böckler, Benjamin

AU - Griffiths-Jones, Sam

AU - Hollich, Volker

AU - Lassmann, Timo

AU - Moxon, Simon

AU - Marshall, Mhairi

AU - Khanna, Ajay

AU - Durbin, Richard

AU - Eddy, Sean R

AU - Sonnhammer, Erik L L

AU - Bateman, Alex

N1 - © The Author 2006. Published by Oxford University Press. All rights reserved The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact [email protected]

PY - 2006

Y1 - 2006

N2 - Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are described in detail, together with the new associated web pages. Improvements to the range of Pfam web tools and the first set of Pfam web services that allow programmatic access to the database and associated tools are also presented. Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://pfam.cgb.ki.se/).

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DO - 10.1093/nar/gkj149

M3 - Article

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SN - 0305-1048

VL - 34

SP - D247-D251

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - Suppl 1

ER -