TY - JOUR
T1 - Propagating uncertainty from physical and biogeochemical drivers through to top predators in dynamic Bayesian ecosystem models improves predictions
AU - Trifonova, Neda
AU - Wihsgott, Juliane
AU - Scott, Beth
N1 - Data availability:
The sources (i.e., public links) for the data used in this study are shown in Table 1. Data were directly downloaded from the public links provided, except for the zooplankton data for which a data request process was needed, please see here: https://www.cprsurvey.org/data/our-data/. The harbour porpoise data is not publicly available. For specific request regarding access to the harbour porpoise data, please refer to the organizations involved in the collection of the data, provided in the SI. The source code is available in the SI. The BNT toolbox with build in functions to reproduce the work is available here: https://github.com/bayesnet/bnt.
PY - 2025/12/1
Y1 - 2025/12/1
N2 - With the global rapid expansion of offshore renewable energies, there is an urgent need to assess and predict effects on marine species, habitats, and ecosystem functioning. Doing so will require dynamic, multitrophic, ecosystem-centric approaches coupled with oceanographic models that can allow for physical and/or biogeochemical indicators of marine ecosystem change to be included. However, in such coupled approaches, indicators carry uncertainties that can propagate and affect species higher up the trophic chain. Dynamic Bayesian networks (DBNs) are pragmatic approaches that probabilistically represent ecosystem-level interactions. They allow for uncertainties to be better estimated than mechanistic models that only account for expected values. In this study, we calculated variance as a measure of uncertainty from selected indicators and used them to build DBN models. A hidden variable was incorporated to model functional ecosystem change, where the underlying interactions dramatically change, following a disturbance. We wanted to assess whether propagating uncertainty into the modelling process affects the predictive accuracy of the models in the context of reconstructing the time series of the ecosystem dynamics. Model accuracy was improved for 60 % of the species once variance was added. The models were better in capturing the temporal inter-annual variability, once variance was calculated with a rolling window approach. The hidden variable successfully modelled previously identified ecosystem changes, however, now with the added uncertainty, the changes that implicated the ecosystem state were identified earlier in the time series. The results indicate that using DBNs is highly valuable as it gains accuracy with the addition of uncertainty.
AB - With the global rapid expansion of offshore renewable energies, there is an urgent need to assess and predict effects on marine species, habitats, and ecosystem functioning. Doing so will require dynamic, multitrophic, ecosystem-centric approaches coupled with oceanographic models that can allow for physical and/or biogeochemical indicators of marine ecosystem change to be included. However, in such coupled approaches, indicators carry uncertainties that can propagate and affect species higher up the trophic chain. Dynamic Bayesian networks (DBNs) are pragmatic approaches that probabilistically represent ecosystem-level interactions. They allow for uncertainties to be better estimated than mechanistic models that only account for expected values. In this study, we calculated variance as a measure of uncertainty from selected indicators and used them to build DBN models. A hidden variable was incorporated to model functional ecosystem change, where the underlying interactions dramatically change, following a disturbance. We wanted to assess whether propagating uncertainty into the modelling process affects the predictive accuracy of the models in the context of reconstructing the time series of the ecosystem dynamics. Model accuracy was improved for 60 % of the species once variance was added. The models were better in capturing the temporal inter-annual variability, once variance was calculated with a rolling window approach. The hidden variable successfully modelled previously identified ecosystem changes, however, now with the added uncertainty, the changes that implicated the ecosystem state were identified earlier in the time series. The results indicate that using DBNs is highly valuable as it gains accuracy with the addition of uncertainty.
KW - Bio-physical
KW - Climate change
KW - Functional ecosystem change
KW - Hidden variable
KW - Indicators
KW - Marine renewable energy
UR - http://www.scopus.com/inward/record.url?scp=105021952045&partnerID=8YFLogxK
U2 - 10.1016/j.ecoinf.2025.103510
DO - 10.1016/j.ecoinf.2025.103510
M3 - Article
AN - SCOPUS:105021952045
SN - 1574-9541
VL - 92
JO - Ecological Informatics
JF - Ecological Informatics
M1 - 103510
ER -