Recovering normal networks from shortest inter-taxa distance information

Magnus Bordewich, Katharina T. Huber, Vincent Moulton, Charles Semple

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6 Citations (Scopus)
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Abstract

Phylogenetic networks are a type of leaf-labelled, acyclic, directed graph used by biologists to represent the evolutionary history of species whose past includes reticulation events. A phylogenetic network is tree–child if each non-leaf vertex is the parent of a tree vertex or a leaf. Up to a certain equivalence, it has been recently shown that, under two different types of weightings, edge-weighted tree–child networks are determined by their collection of distances between each pair of taxa. However, the size of these collections can be exponential in the size of the taxa set. In this paper, we show that, if we have no “shortcuts”, that is, the networks are normal, the same results are obtained with only a quadratic number of inter-taxa distances by using the shortest distance between each pair of taxa. The proofs are constructive and give cubic-time algorithms in the size of the taxa sets for building such weighted networks.
Original languageEnglish
Pages (from-to)571–594
JournalJournal of Mathematical Biology
Volume77
Issue number3
Early online date24 Feb 2018
DOIs
Publication statusPublished - Sep 2018

Keywords

  • normal phylogenetic network
  • distance
  • tree-child
  • edge-weighting
  • algorithm

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