The DynDom3D webserver for the analysis of domain movements in multimeric proteins

Christopher Girdlestone, Steven Hayward

Research output: Contribution to journalArticle

30 Citations (Scopus)
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Abstract

DynDom3D is a program for the analysis of domain movements in multimeric proteins. Its input is two structure files that indicate a possible domain movement, but the onus has been on the user to process the files so that there is the necessary one-to-one equivalence between atoms in the two atom lists. This is often a prohibitive task to carry out manually which has limited the application of DynDom3D. Here we report on a webserver with a pre-processor that automatically creates an equivalence between atoms using sequence alignment methods. The processed structure files are passed to DynDom3D and the results are presented on a webpage that includes molecular graphics for easy visualization. The website can be found at: http://www.cmp.uea.ac.uk/dyndom/3D
Original languageEnglish
Pages (from-to)21-26
Number of pages6
JournalJournal of Computational Biology
Volume23
Issue number1
Early online date5 Nov 2015
DOIs
Publication statusPublished - 31 Dec 2015

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